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Search results for pipeline transposable elements

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4 search results found

Extensive de-novo TE Annotator

Salmonte ⭐ 67

SalmonTE is an ultra-Fast and Scalable Quantification Pipeline of Transpose Element (TE) Abundances

Dnapipete ⭐ 38

dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify Transposable Elements in small samples of NGS datasets. It is very useful to quantify the proportion of TEs in newly sequenced genomes since it does not require genome assembly and works on small datasets (< 1X).

Nf Repeatmasking ⭐ 5

Nextflow workflow for automatic repeat detection, classification and masking

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