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Search results for somatic mutations

somatic-mutations x

19 search results found

Microassembly based somatic variant caller for NGS data

Dna Seq Analysis ⭐ 128

DNA sequencing analysis notes from Ming Tang

Sigminer ⭐ 119

🌲 An easy-to-use and scalable toolkit for genomic alteration signature (a.k.a. mutational signature) analysis and visualization in R https://shixiangwang.github.io/sigminer/reference/

Cardelino ⭐ 57

Clone identification from single-cell data

Palimpsest ⭐ 56

An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.

DeTiN is designed to measure tumor-in-normal contamination and improve somatic variant detection sensitivity when using a contaminated matched control.

Deepsomatic ⭐ 45

DeepSomatic is an analysis pipeline that uses a deep neural network to call somatic variants from tumor-normal sequencing data.

ClairS - a deep-learning method for long-read somatic small variant calling

Balsamic ⭐ 40

Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer

Needlestack ⭐ 39

Multi-sample somatic variant caller

Clairs To ⭐ 18

ClairS-TO - a deep-learning method for tumor-only somatic SNV calling

Transposon Insertion Finder - Detection of new TE insertions in NGS data

Detects hotspot regions for somatic mutations in 3D protein structures

Somaticfreq ⭐ 8

knowledge-based genotyping of cancer hotspots from the tumor BAM files

nRex: Germline and somatic single-nucleotide, short indel and structural variant calling

Tumor-only variant calling

Explore and filter structural variant calls from Lumpy and Delly VCF files

An R package for mutation quality control of cancer genomic sequening dataset

Transposable Element Finder - Detection of active transposable elements from NGS data

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