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Search results for snakemake workflows
snakemake-workflows
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22 search results found
Maestro
⭐
181
Single-cell Transcriptome and Regulome Analysis Pipeline
Docs
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120
Documentation of the Snakemake-Workflows project
Tibanna
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68
Tibanna helps you run your genomic pipelines on Amazon cloud (AWS). It is used by the 4DN DCIC (4D Nucleome Data Coordination and Integration Center) to process data. Tibanna supports CWL/WDL (w/ docker), Snakemake (w/ conda) and custom Docker/shell command.
Benchpress
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52
A Snakemake workflow to run and benchmark structure learning (a.k.a. causal discovery) algorithms for probabilistic graphical models.
Balsamic
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40
Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer
Snakemake Econ R
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35
reproducible research project template for R using Renv and snakemake with an econ application
Stag Mwc
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24
StaG Metagenomic Workflow Collaboration
Maestro
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21
Single-cell Transcriptome and Regulome Analysis Pipeline.
Rna Seq Pop
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17
Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data
Metscale
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16
MetScale: snakemake workflows to scale metagenome analyses
Amoebae
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14
Workflow for identifying and classifying homologous gene/protein sequences
Snakemake Wrappers
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14
🐍 Snakemake wrappers for bioinformatics.
Ngs Test Data
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14
A workflow for creating small NGS test data sets, useful for continuous integration.
Pigx_scrnaseq
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9
Pipeline for analysis of Dropseq single cell data
Pypsa Fes
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8
A model that optimises investment and operation, and incorporates flexibility domestic demand flexibility to model scenarios for Great Britain's future energy system.
Eems Around The World
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8
Repo to analyze population genetic data with many different methods
Crispr_dart
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7
A workflow to analyse sequence mutations in CRISPR-CAS9 targeted amplicon sequencing data
Pyinseq
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6
Python pipeline for analyzing INSeq Insertion Sequencing data
Sars2seq
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5
SARS2seq is a pipeline designed to process raw FastQ data from targeted SARS-CoV-2 sequencing and generate biologically correct consensus sequences of the SARS-CoV-2 genome.
Nanoflow
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5
Bioinformatics pipeline for nanopore sequencing data
Lyric
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5
Long RNA-seq analysis workflow
Snakeflows
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5
Collective Snakemake workflows for easy and reproducible NGS data analysis.
Related Searches
Python Snakemake Workflows (32)
Bioinformatics Snakemake Workflows (15)
1-22 of 22 search results
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