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Search results for python snakemake workflows
python
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snakemake-workflows
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8 search results found
Tibanna
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68
Tibanna helps you run your genomic pipelines on Amazon cloud (AWS). It is used by the 4DN DCIC (4D Nucleome Data Coordination and Integration Center) to process data. Tibanna supports CWL/WDL (w/ docker), Snakemake (w/ conda) and custom Docker/shell command.
Benchpress
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52
A Snakemake workflow to run and benchmark structure learning (a.k.a. causal discovery) algorithms for probabilistic graphical models.
Balsamic
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40
Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer
Stag Mwc
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24
StaG Metagenomic Workflow Collaboration
Metscale
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16
MetScale: snakemake workflows to scale metagenome analyses
Snakemake Wrappers
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14
🐍 Snakemake wrappers for bioinformatics.
Ngs Test Data
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14
A workflow for creating small NGS test data sets, useful for continuous integration.
Amoebae
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14
Workflow for identifying and classifying homologous gene/protein sequences
Pigx_scrnaseq
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9
Pipeline for analysis of Dropseq single cell data
Pypsa Fes
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8
A model that optimises investment and operation, and incorporates flexibility domestic demand flexibility to model scenarios for Great Britain's future energy system.
Crispr_dart
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7
A workflow to analyse sequence mutations in CRISPR-CAS9 targeted amplicon sequencing data
Pyinseq
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6
Python pipeline for analyzing INSeq Insertion Sequencing data
Sars2seq
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5
SARS2seq is a pipeline designed to process raw FastQ data from targeted SARS-CoV-2 sequencing and generate biologically correct consensus sequences of the SARS-CoV-2 genome.
Lyric
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5
Long RNA-seq analysis workflow
Snakeflows
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5
Collective Snakemake workflows for easy and reproducible NGS data analysis.
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