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4 search results found
Ffmpeg Builds
⭐
6,150
Kubernetes Kafka
⭐
1,792
Kafka cluster as Kubernetes StatefulSet, plain manifests and config
Vimix Gtk Themes
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1,576
Vimix is a flat Material Design theme for GTK 3, GTK 2 and Gnome-Shell etc.
Space Grotesk
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1,353
Space Grotesk: a proportional variant of the original fixed-width Space Mono family
Cityhash
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883
Automatically exported from code.google.com/p/cityhash
Circleci Images
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415
Scripts to generate images for building projects on CircleCI 2.0
Roundcubemail Docker
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230
Resources to build Docker images for Roundcube Webmail
Bigbagkbdtrixxkb
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169
"DreymaR's Big Bag of Keyboard Tricks" for *nix with XKB
Thinking_faces
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141
🤔🤔🤔
Wet Boew Drupal
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139
Drupal variant of the Web Experience Toolkit (WET)
Gnap Core Protocol
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137
Dna Seq Analysis
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128
DNA sequencing analysis notes from Ming Tang
Tensorflow Cpp
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97
Pre-built TensorFlow for C/C++ and CMake.
Stylish Gtk Theme
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87
Stylish is a stylish Material Design theme for GTK 3, GTK 2 and Gnome-Shell etc.
Hive Pooltemplates
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86
Pool templates available in Hive 2.0
Grub2 Theme Breeze
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85
A minimalistic GRUB theme inspired by Breeze
Xfce4 Night Mode
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79
XFCE4 GenMon plugin: Switch between light and dark variants of a theme
Gradle Android Javadoc Plugin
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76
Gradle plugin that generates Java Documentation from an Android Gradle project.
Wrangling Genomics
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62
Data Wrangling and Processing for Genomics
Docker
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57
Docker Image for PostfixAdmin
Sentieon Scripts
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53
Helper scripts for biological data processing from Sentieon
Teamteri
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50
Genomics (computational bioinformatic data analysis) running on GCP, AWS or Azure
Sv Plaudit
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47
Pipeline for structural variant image curation and analysis.
Bashing
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42
Smashing Bash into Pieces
Vscode Nako Theme
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41
Nako is a premium dark color theme for Visual Studio Code.
Xtensa Toolchain Build
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37
Xtensa toolchain building scripts
Dotfiles
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37
. files
Main
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36
Documentation, releases, and issues
Genome Data Integration
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35
Methods to integrate data from multiple genome sequencing datasets and form consensus variant calls
Ubuntudockerpi
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31
Ready to use 64bit ARM Docker for Raspberry Pi running on Ubuntu
Defcon 23 Presentation
⭐
30
USB Attack to Decrypt Wi-Fi Communications
Mcmuse Icon Theme
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30
A colorful Design icon theme for linux desktops
Docker Django
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28
Base Docker image for Django and Gunicorn.
Tensorflow_recipes
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27
Tensorflow conda recipes
Docker Base
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26
Just enough to get process supervision and startup mechanisms
Kali Live Build Config
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23
Kali Linux ™ build tool targeted for Hardware Hacking tools
Event Logging Schema
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23
Event Logging is an XML Schema for describing the auditable events generated by computer systems, hardware devices and access control systems
St2 046 Poc
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22
st2-046-poc CVE-2017-5638
Photoprismpi
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21
An out of the box Raspberry distro based on Ubuntu with PhotoPrism installed
Arc Variants
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21
Automatic generation of new color variants of the Arc theme
Automap
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19
Tool to find regions of homozygosity (ROHs) from sequencing data.
1000g Integration
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19
variant integration methods for the 1000 Genomes Project
Rtgeval
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19
Wrapper for RTG's vcfeval; DEPRECATED!
Browser Tools Orb
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19
Quickly and easily install common browsers and browser testing tools on CircleCI
Mayomicsvc
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16
Variant Calling Pipeline in Cromwell/WDL
Appliance Build
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16
This repository contains the code used to build the Ubuntu-based Delphix Appliance, leveraging open-source tools such as Debian's live-build, Docker, Ansible, OpenZFS, and others.
Clinicalgradednaseq
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15
Automated next generation DNA sequencing analysis pipeline suited for clinical tests, with >99.9% sensitivity to Sanger sequencing at read-depth>18
Annotatevariants
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14
This is a pipeline for variant annotation in the diagnosis of rare genetic disorders. It relies on open source data and has instructions for software installs.
Variants2neoantigen
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14
a neoantigen calling pipeline begins from variants record file (MAF)
Empty
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13
Empty is a simple shell-friendly variant of "expect" tool
Ngs_dna
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13
NGS DNA best practice pipeline for Illumina sequencing - alignment, variant calling, annotation and QC
Crant
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13
Tools for building R packages for CRAN
Gatk Pipeline
⭐
12
A shell script which implements GATK pipeline for variant calling.
Gwastoolkit
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12
A collection of scripts to run GWAS, regional, gene-oriented, or per-variant analyses.
Illumina Array Protocols
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11
processing illumina SNP arrays
Papirus Folder Icon Creator
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11
Shell script to generate folder icons for the Papirus icon theme!
Gnome Shell Extension Pitch Dark
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11
A GNOME Shell extension that forces all application windows to use the dark GTK theme variant.
Keyboardio Xkb
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11
Some XKB files for use with the Keyboardio Model 01
Variant Calling Pipeline
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11
HPC based pipelines for variant calling using GATK
Deepvariant On Spark
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11
DeepVariant-on-Spark is a germline short variant calling pipeline that runs Google DeepVariant on Apache Spark at scale.
Metagwastoolkit
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10
A ToolKit to perform a Meta-analysis of Genome-Wide Association Studies
Cityhash
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10
Google's City Hash functions
Ensemblevariantcallingpipeline
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10
The EnsembleVariantCallingPipeline takes files in FASTQ or BAM format and performs SNV and INDEL variant calling from 4 variant callers (Mutect2, Strelka2, Varscan2, MuSE) and indel variant calling from 3 variant callers (Mutect2, Strelka2, Varscan2).
Gatk Swe
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9
GATK pipeline compatible with Cirrus
Chsh Variant Wsl2 Systemd
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8
The 'change the user shell' variant of the systemd hack for WSL2
Glowing Bear Docker
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8
Docker scripts for Glowing Bear
Mb Gatk Sge
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8
SGE scripts / pipeline for running GATK/VEP on a cluster
Dv Trio
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8
dv-trio provides a pipeline to call variants for a trio (father-mother-child) using DeepVariants [1]. Genomic Variant Calling Files (gVCFs) created by DeepVariants are then co_called together using GATK[2]. The resultant trio VCF is then post-processing with FamSeq[3] to eliminate mendelian errors.
Workflow Testing
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8
Automated testing of workflows against Galaxy
Honeypot Install Script
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8
Honeypot Auto-Install script that install and deploy multiple variant of honeypot automatically with minimal of user interaction.
Pg Serializability Bug
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8
Reproduction code for Postgres BUG #13667
Nrex
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8
nRex: Germline and somatic single-nucleotide, short indel and structural variant calling
Sentieon Dnascope Ml
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7
Sentieon DNAscope + Machine Learning Model
Wes.wgs
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7
Covid-19 HGI WES/WGS burden test BQC-19 pipeline
Go Feedstock
⭐
7
A conda-smithy repository for go.
Bam_processing
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7
Process SAM/BAM files accroding to the 1k genomes methods
Exomepipe
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7
WGS and Exome analysis pipeline
Cre
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6
excel report generation using data from bcbio variant2 germline pipeline
Mouseexomesequencing
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6
A pipeline for variant calling from exome sequence data from murine tumors.
Winfiles
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6
Dotfiles variant for Windows
Docker Terraform
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6
A base Docker image for Terraform.
Virtual Normal Correction
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6
Set of commandline tools for analysis of tumor variants without a matching normal. Method described in Genome Research: http://genome.cshlp.org/content/25/9/1382.full
Docker Nginx Uwsgi Flask
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6
Docker image to quickly deploy Python Flask Web Apps on NGINX. Image includes Nginx, uWSGI, Python, and Flask
Decapod Base Yaml
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6
Yaml for DECAPOD (Declarative Application Orchestration & Delivery )
Variantqc
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5
Variant quality checking scripts.
Competitive Alignment
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5
Heroku Buildpack Mapnik
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5
Heroku buildpack with Mapnik and its dependencies
Unmscentos
⭐
5
Ubiquiti UNMS Workaround for Installation on Centos
Xenocp
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5
A cloud-based tool for mouse read cleansing in xenograft samples
Android_tools
⭐
5
A collection of tools I use for my Android CI/CD pipeline
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