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Search results for sequencing variant calling
sequencing
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variant-calling
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14 search results found
Sarek
⭐
299
Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
Clairvoyante
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142
Clairvoyante: a multi-task convolutional deep neural network for variant calling in Single Molecule Sequencing
Sequana
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136
Sequana: a set of Snakemake NGS pipelines
Tracy
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92
Basecalling, alignment, assembly and deconvolution of Sanger Chromatogram trace files
Ilus
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89
A handy variant calling pipeline generator for whole-genome sequencing (WGS) and whole exom sequencing data (WES) analysis. 一个简易且全面的 WGS/WES 分析流程生成器.
Hla
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57
xHLA: Fast and accurate HLA typing from short read sequence data
Indigo
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29
Indigo: SNV and InDel Discovery in Chromatogram traces obtained from Sanger sequencing of PCR products
Gatk4_best_practice
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18
GATK4 Best Practice Nextflow Pipeline
Rmetl
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16
rMETL - realignment-based Mobile Element insertion detection Tool for Long read
Nrex
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8
nRex: Germline and somatic single-nucleotide, short indel and structural variant calling
Rmahunter
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6
Harpy
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6
Process raw haplotagging data, from raw sequences to phased haplotypes, batteries included.
Allmine
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5
AllMine, a flexible pipeline for Allele Mining. Develloped at INRA's GAFL unit :
Rdxon
⭐
5
Reference-free FASTQ filter for rare germline and somatic variants
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