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Search results for sequencing illumina

11 search results found

Fastp ⭐ 1,602

An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging.

Genomics ⭐ 154

A collection of scripts and notes related to genomics and bioinformatics

Ampliseq ⭐ 141

Amplicon sequencing analysis workflow using DADA2 and QIIME2

Allelic decomposition and exact genotyping of highly polymorphic and structurally variant genes

Awesome Sequencing Tech Papers ⭐ 26

A collection of publications on comparison of high-throughput sequencing technologies.

CheckQC inspects the content of an Illumina runfolder and determines if it passes a set of quality criteria

Ultra-fast Multi-threaded FASTQ Demultiplexing

Seqmaker.jl ⭐ 19

(No maintenance) Next Generation Sequencing Simulation with SNP, Variation and Sequencing Error Integrated

Design degenerated primers on highly variable alignments for full genome sequencing or qPCR. Specifically developed for viruses.

A straightforward and complete next-generation sequencing read simulator

16s Rdna V3 V4 ⭐ 8

16S rDNA V3-V4 amplicon sequencing analysis using dada2, phyloseq, LEfSe, picrust2 and other tools. Demo: https://ycl6.github.io/16S-Demo/

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