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37 search results found
Script
⭐
4,569
Making it easy to write shell-like scripts in Go
Pypyr
⭐
560
pypyr task-runner cli & api for automation pipelines. Automate anything by combining commands, different scripts in different languages & applications into one pipeline process.
Videoshader
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238
Script-based real-time video processing technology for OpenGL/iOS
Bpipe
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220
Bpipe - a tool for running and managing bioinformatics pipelines
Xrm Ci Framework
⭐
181
xRM CI Framework provides you with the tools automate the build and deployment of your CRM Solution. Using the framework to implement a fully automated DevOps pipeline will allow you to deploy more frequently with added consistency and quality.
Gt Tools
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101
GT Tools is a free collection of scripts for Autodesk Maya
Gulp Add Src
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88
Add more 'src' files at any point in the pipeline (gulp plugin)
Jenkins Jack
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66
Jack into your Jenkins to execute Pipeline scripts, provide Pipeline step autocompletions, pull Shared Library step documenation, run console groovy scripts across multiple nodes, and more! Honestly, not that much more.
Sentieon Scripts
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53
Helper scripts for biological data processing from Sentieon
Slurm Pipeline
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47
A Python class for scheduling SLURM jobs
Jenkins Workflow
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41
contains handy groovy workflow-libs scripts
Seed Plugin
⭐
38
Seed Jenkins plug-in
Samsa2
⭐
35
SAMSA pipeline, version 2.0. An open-source metatranscriptomics pipeline for analyzing microbiome data, built around DIAMOND and customizable reference databases.
Magento2 Deployscripts
⭐
34
Scripts to deploy Magento2 projects with CI Pipeline
Scripts
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33
Metagenomic pipeline and other general scripts used in the lab.
Pipeline Library
⭐
25
Pipeline library for StreamSets Data Collector and Transformer
Public_scripts
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24
collection of bioinformatic scripts
Ef Migrations Script Generator Task
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23
Jenkins Pipeline Shared Libraries
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22
This repository contains shared libraries used across different KIE Jenkins pipeline scripts.
Jobtree
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22
Python based pipeline management software for clusters (but checkout toil: https://github.com/BD2KGenomics/toil, its successor)
Pipewrench
⭐
22
Data pipeline automation tool
Release Pipeline Example
⭐
19
Release Pipeline example using PowerShell-based tools
Easv Pipeline For 515y 926r
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19
This is a collection of scripts for analyzing mixed 16S/18S amplicon sequences using tools such as qiime2, DADA2, deblur, and bbtools
Go_scriptish
⭐
18
scriptish is a library to help you port bash scripts to Golang
Paw_pipeline
⭐
18
A Comet-based, best practices proteomics pipeline.
Commons
⭐
17
Bitbucket Sync
⭐
16
Mirror of BitBucket Sync project hosted on BitBucket
Glider.js
⭐
15
A lodash style library for ServiceNow GlideRecord
Targetsketch
⭐
15
Sketch a pipeline of targets in an interactive web app
Jenkins Runner
⭐
15
VS Code plugin to develop and run Jenkins Pipeline scripts
Plaid Transaction Script
⭐
14
Automate bank transaction data using the Plaid API into Google Sheets
Icshape
⭐
14
icSHAPE pipeline
Gatk Pipeline
⭐
12
A shell script which implements GATK pipeline for variant calling.
Kasini3000
⭐
12
automation operation and maintenance tool for script.Similar to Puppet, SaltStack, Ansible, pipeline. Specifically developed for the shortcomings of ansible.
Psap Pipeline
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12
Gleam X Pipeline
⭐
11
Processing pipeline for GLEAM-X
Pup
⭐
11
PET Unified Pipeline
Dnase_pipeline
⭐
11
ENCODE DNase-seq pipeline essentials for running on dnanexus.
Singlecelllineage
⭐
11
Updated scripts and pipelines for processing GESTALT data at single-cell resolution
Seven_sins
⭐
11
COMP90024 Team58 Project Repository
Cancer Biomarker Prediction Pipeline Campp
⭐
10
The Cancer bioMarker Prediction Pipeline (CAMPP)
Uniclust Pipeline
⭐
10
4pipe4
⭐
10
A NGS data analysis pipeline with emphasis on SNP detection
Pnlnipype
⭐
10
PNL pipeline for NIFTI images
Illuminati
⭐
10
scripts to automate illumina secondary analysis pipeline
Damidseq_pipeline
⭐
10
An automated pipeline for processing DamID sequencing datasets
Ngsperl
⭐
10
NGS perl modules
Indus Script Ocr
⭐
9
The Indus script optical grapheme recognition engine (from archaeological artifact images)
Cleaning Scripts
⭐
9
Cleaning scripts used in the fhir integration pipeline
Letterboxd_utility_tools
⭐
9
Scripts to work with Letterboxd RSS feed and CSV's. From a pipeline to a DB to generating and sorting lists.
Findsv
⭐
9
Structural variant pipeline
Louvijan
⭐
9
A tool to control the script pipeline, which means that scripts can be executed in a specified order.
Build Tools
⭐
9
🛠️ Docker image with CI/CD tools
Mb Gatk Sge
⭐
8
SGE scripts / pipeline for running GATK/VEP on a cluster
Dada2_guidelines
⭐
8
A repository with a general dada2 pipeline for amplicon processing
Jenkins Util Scripts
⭐
8
A collection of scripts, custom steps that can be used in a Jenkins pipeline as a shared library
Deploy Laps
⭐
7
This script and accompanying files will allow system administrators to automatically deploy Microsoft Local Administrator Password Solution.
Findfungi
⭐
7
A pipeline for the identification of fungi in public metagenomics datasets
Bitflow4j
⭐
7
Java adaptation of Bitflow: A lightweight framework for real-time processing of streamed time series data
Genie K8s
⭐
7
Kubernetes scripts to train models with Genie
Scrnaseq_pipelines
⭐
7
Silhouettefx Python Scripts
⭐
7
A collection of Python scripts for SilhouetteFX v7+.
Batch Policy Scripts
⭐
7
sample powershell scripts to create and assign Azure policies from Azure Pipelines
Medip Seq
⭐
7
A set of scripts and functions for analyzing MeDIP-seq datasets
Fungene_pipeline
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7
Scripts and resources for analyzing sequence data for select eco-functional genes
Jenkins Pipeline Scripts
⭐
7
Scripts for Jenkins DSL pipeline
Article Microarrays
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6
Direct integration of microarray data — R scripts for comparing different microarray annotations and probesets selection for cross-platform direct data integration
Jenkins2 Git Email Failure
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6
Example of using a python and groovy script to send emails when a jenkins pipeline job fails
Rotate Concourse Credentials
⭐
6
If a friend accidentally leaks credentials used by Concourse CI then here are two scripts to rotate the credentials across all your pipelines
Reportit
⭐
6
IonTorrent variant reporting pipeline for clinical interpretation of cancer panel results
Cnrap
⭐
6
Analytical pipeline developed to anlayze Cut and Run data. Inspired by both Henikoff (SEACR) and Orkin (Cut&RunTools) lab pipelines.
Jenkins_pipeline_shell_scripts
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6
Project that builds on Jenkins using shell scripts from a Jenkinsfile
Batch_pipeline
⭐
6
Example workflows for a multi-step array job on AWS Batch
Puppet Continuous Delivery Demo
⭐
6
Puppet scripts for continuous delivery demo
Scripts
⭐
6
Common scripts used in balenaCI pipelines
Fabric8 Analytics Nvd Toolkit
⭐
5
Tools for processing National Vulnerability Database feeds.
Dfc Devops
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5
ARM templates, PowerShell modules and scripts, policies, documentation and other resources used in the DFC Azure pipelines
Systemd Centos Ci
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5
CI scripts for systemd upstream/downstream testing using the CentOS CI infrastructure
Wikiduper
⭐
5
Utility for finding similar sentences on wikipedia
Gist Cli
⭐
5
A command-line interface for posting github's Gists.
Demultiplexing
⭐
5
To keep scripts associated with execution of the Illumina demultiplexing pipeline
Mini Pipelines
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5
collection of scripts that chain together other scripts by preparing and processing/transforming data.
Cobasi
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5
Nf Workshop
⭐
5
Nextflow workshop at the Sanger Institute
Rfam Production
⭐
5
Rfam production pipeline
Freesurfer 7t Pipeline
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5
A freesurfer segmentation pipeline optimised for 7T datasets
Pytorch Nn Scripts
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5
Scripts of neural architectures implemented in PyTorch
Eagle Api
⭐
5
EPIC revision 2019
Dotnet Pipelines
⭐
5
A build pipeline framework for dotnet developers
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