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Search results for sam fastq
fastq
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sam
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21 search results found
Gtz
⭐
156
A high performance and compression ratio compressor for genomic data, powered by GTXLab of Genetalks.
Genozip
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144
A modern compressor for genomic files (FASTQ, SAM/BAM/CRAM, VCF, FASTA, GFF/GTF/GVF, 23andMe...), up to 5x better than gzip and faster too
Fastqp
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94
Simple FASTQ quality assessment using Python
Pandaseq
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91
PAired-eND Assembler for DNA sequences
Cljam
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87
A DNA Sequence Alignment/Map (SAM) library for Clojure
Umicollapse
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44
Accelerating the deduplication and collapsing process for reads with Unique Molecular Identifiers (UMI). Heavily optimized for scalability and orders of magnitude faster than a previous tool.
Fuc
⭐
38
Frequently used commands in bioinformatics
Fasta_utilities
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37
A collection of scripts developed to interact with fasta, fastq and sam/bam files.
Blast2bam
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33
Blast2Bam uses the XML results of Blastn, the reference and the fastQ or fasta file(s) to output a SAM file.
Bioview
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27
Readability enhancement tool for bioinformatics data file format
Proc10xg
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16
processing 10x genomics reads
Dnacol
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16
Color DNA/RNA bases in terminal output
Pheniqs
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16
Fast and accurate sequence demultiplexing
Fast5seek
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11
Subset of fast5 files contained in a fastq, BAM, or SAM file.
Freehic
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8
FreeHi-C pipeline for high fidelity Hi-C data simulation.
Seq_file
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8
Library for Reading Bioinformatic Sequence Data in C
Seqkit
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7
Toolkit for manipulating FASTA and SAM files
Cplate
⭐
7
Digestion template-based deconvolution for chromatin structure inference.
Tetools
⭐
6
TE tools for TE RNASeq and smallRNASeq analysis with galaxy
Umi Analysis
⭐
6
Scripts for processing Illumina sequence data containing unique molecular identifiers (UMI)
Bioinformatics One Liners
⭐
5
📝 Useful bioinformatics one-line commands.
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1-21 of 21 search results
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