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Search results for r cancer genomics
cancer-genomics
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29 search results found
Maftools
⭐
400
Summarize, Analyze and Visualize MAF files from TCGA or in-house studies.
Pcgr
⭐
234
Personal Cancer Genome Reporter (PCGR)
Numbat
⭐
122
Haplotype-aware CNV analysis from single-cell RNA-seq
Palimpsest
⭐
56
An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.
Revolver
⭐
53
REVOLVER - Repeated Evolution in Cancer
Cpsr
⭐
50
Cancer Predisposition Sequencing Reporter (CPSR)
Cbioportaldata
⭐
29
Integrate the cancer genomics portal, cBioPortal, using MultiAssayExperiment
Sevenbridges R
⭐
27
Seven Bridges API Client, CWL Schema, Meta Schema, and SDK Helper in R
Clonealign
⭐
25
Bayesian inference of clone-specific gene expression estimates by integrating single-cell RNA-seq and single-cell DNA-seq data
Cacao
⭐
22
Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer
Cfdnapro
⭐
20
cfDNAPro specializes in standardized and robust cfDNA fragmentomic analysis
Cgdsr
⭐
18
R-Based API for accessing the MSKCC Cancer Genomics Data Server (CGDS)
Sigprofilermatrixgeneratorr
⭐
17
R wrapper for utilizing the SigProfilerMatrixGenerator framework
Biocancer
⭐
15
♋ 🆓 A Shiny App for Interactive Multi-OMICS Cancer Data Visualization and analysis
Sigprofilerextractorr
⭐
11
An R wrapper for SigProfilerExtractor that allows de novo extraction of mutational signatures from data generated in a matrix format. The tool identifies the number of operative mutational signatures, their activities in each sample, and the probability for each signature to cause a specific mutation type in a cancer sample. The tool makes use of SigProfilerMatrixGenerator and SigProfilerPlotting.
Ectmb
⭐
10
Bioconcotk
⭐
9
Bioconductor components for general cancer genomics
Gpgr
⭐
8
📚 Genomics Platform Group Reporter
Consensustme
⭐
8
ConsensusTME Gene Sets and R Script
Pc_cna_signature
⭐
8
Prostate Cancer Alteration Signature Analysis
Scnova
⭐
7
scNOVA : Single-Cell Nucleosome Occupancy and genetic Variation Analysis
Curatedpcadata
⭐
7
Curated Prostate Cancer Data R-package
Geneoncox
⭐
6
Human gene annotations for the oncology domain
Camutqc
⭐
6
An R package for mutation quality control of cancer genomic sequening dataset
Tidyestimate
⭐
6
ESTIMATE tumor infiltration, the tidy way
Raids
⭐
5
Accurate and robust inference of genetic ancestry from cancer-derived molecular data across genomic platforms
Enfusion
⭐
5
The ENsemble Fusion (EnFusion) repo contains a Dockerfile to build a Docker Image that can overlap outputs from 7 fusion detection algorithms, to identify high confidence fusion events.
Sigrap
⭐
5
🎶 Wrappers for somatic mutation signature analysis tools
Gremlin
⭐
5
GREMLIN: Genomic REarrangements by Machine Learning-based INspection
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