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Search results for python single cell genomics

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13 search results found

Squidpy ⭐ 362

Spatial Single Cell Analysis in Python

Cellrank ⭐ 279

CellRank: dynamics from multi-view single-cell data

Single cell perturbation prediction

Snapatac2 ⭐ 133

Single-cell epigenomics analysis tools

Toolkit for highly memory efficient analysis of single-cell RNA-Seq, scATAC-Seq and CITE-Seq data. Analyze atlas scale datasets with millions of cells on laptop.

Semi-supervised adversarial neural networks for classification of single cell transcriptomics data

The Compositional Perturbation Autoencoder (CPA) is a deep generative framework to learn effects of perturbations at the single-cell level. CPA performs OOD predictions of unseen combinations of drugs, learns interpretable embeddings, estimates dose-response curves, and provides uncertainty estimates.

Pyrovelocity ⭐ 31

𝒫robabilistic modeling of RNA velocity ⬱

A deep learning architecture for robust inference and accurate prediction of cellular dynamics

A deep learning-based tool for alignment and integration of single cell genomic data across multiple datasets, species, conditions, batches

The Broad Institute Single Cell Rna Seq Data Set ⭐ 9

Visualize cancer genomes with FAIR single-cell RNA-seq data

SCGV is an interactive graphical tool for single-cell genomics data, with emphasis on single-cell genomics of cancer

Singlecellhaystack Py ⭐ 8

Finding surprising needles (=features) in haystacks (=single cell/spatial genomics data).

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