Project Name | Stars | Downloads | Repos Using This | Packages Using This | Most Recent Commit | Total Releases | Latest Release | Open Issues | License | Language |
---|---|---|---|---|---|---|---|---|---|---|
Awesome Cancer Variant Databases | 284 | 6 months ago | 1 | mit | ||||||
A community-maintained repository of cancer clinical knowledge bases and databases focused on cancer variants. | ||||||||||
Ideogram | 265 | 5 | 8 | 3 months ago | 76 | September 05, 2023 | 32 | other | JavaScript | |
Chromosome visualization for the web | ||||||||||
Pygeno | 242 | 1 | 4 years ago | 18 | December 15, 2021 | 5 | apache-2.0 | Python | ||
Personalized Genomics and Proteomics. Main diet: Ensembl, side dishes: SNPs | ||||||||||
Pcgr | 234 | 6 months ago | 13 | mit | R | |||||
Personal Cancer Genome Reporter (PCGR) | ||||||||||
Lancet | 145 | 2 years ago | other | C | ||||||
Microassembly based somatic variant caller for NGS data | ||||||||||
Sigprofilerextractor | 132 | 3 | 5 months ago | 50 | November 21, 2023 | 1 | bsd-2-clause | Python | ||
SigProfilerExtractor allows de novo extraction of mutational signatures from data generated in a matrix format. The tool identifies the number of operative mutational signatures, their activities in each sample, and the probability for each signature to cause a specific mutation type in a cancer sample. The tool makes use of SigProfilerMatrixGenerator and SigProfilerPlotting. | ||||||||||
Sigprofilermatrixgenerator | 91 | 1 | 10 | 3 months ago | 102 | October 02, 2023 | 5 | bsd-2-clause | Python | |
SigProfilerMatrixGenerator creates mutational matrices for all types of somatic mutations. It allows downsizing the generated mutations only to parts for the genome (e.g., exome or a custom BED file). The tool seamlessly integrates with other SigProfiler tools. | ||||||||||
Agfusion | 46 | 1 | a year ago | 38 | February 10, 2023 | 4 | mit | Python | ||
Python package to annotate and visualize gene fusions. | ||||||||||
Genome Nexus | 38 | 4 months ago | 194 | mit | Java | |||||
Backend server for Genome Nexus | ||||||||||
Sigprofilersimulator | 18 | 7 months ago | bsd-2-clause | Python | ||||||
SigProfilerSimulator allows realistic simulations of mutational patterns and mutational signatures in cancer genomes. The tool can be used to simulate signatures of single point mutations, double point mutations, and insertion/deletions. Further, the tool makes use of SigProfilerMatrixGenerator and SigProfilerPlotting. |