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Search results for python mri
mri
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python
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127 search results found
Fastmri
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1,197
A large-scale dataset of both raw MRI measurements and clinical MRI images.
Sigpy
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276
Python package for signal processing, with emphasis on iterative methods
Intensity Normalization
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272
normalize the intensities of various MR image modalities
Spinalcordtoolbox
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184
Comprehensive and open-source library of analysis tools for MRI of the spinal cord.
Cnn 3d Images Tensorflow
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176
3D image classification using CNN (Convolutional Neural Network)
Deepinv
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165
PyTorch library for solving imaging inverse problems using deep learning
Deep Mri Reconstruction
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159
Deep Cascade of Convolutional Neural Networks for MR Image Reconstruction: Implementation & Demo
Torchkbnufft
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133
A high-level, easy-to-deploy non-uniform Fast Fourier Transform in PyTorch.
Livianet
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133
This repository contains the code of LiviaNET, a 3D fully convolutional neural network that was employed in our work: "3D fully convolutional networks for subcortical segmentation in MRI: A large-scale study"
Unsupervised_anomaly_detection_brain_mri
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123
Autoencoders for Unsupervised Anomaly Segmentation in Brain MR Images: A Comparative Study
Smriprep
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111
Structural MRI PREProcessing (sMRIPrep) workflows for NIPreps (NeuroImaging PREProcessing tools)
Bidscoin
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110
BIDScoin converts your source-level neuroimaging data to BIDS
Enigma
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101
The ENIGMA Toolbox is an open-source repository for accessing 100+ ENIGMA statistical maps, visualizing cortical and subcortical surface data, and relating neuroimaging findings to micro- and macroscale brain organization. 🤠
Pypulseq
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98
Pulseq in Python
Pcrlv2
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83
An official implementation of PCRLv2 (pre-training and fine-tuning code are included).
3d Gan Superresolution
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79
3D super-resolution using Generative Adversarial Networks
Mrqy
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73
MRQy is a quality assurance and checking tool for quantitative assessment of magnetic resonance imaging (MRI) data.
Resvit
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70
Official Implementation of ResViT: Residual Vision Transformers for Multi-modal Medical Image Synthesis
Segmentator
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68
3D MRI data exploration and segmentation tool.
Meddlr
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59
A flexible ML framework built to simplify medical image reconstruction and analysis experimentation.
Bidskit
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57
Utility functions for working with DICOM and BIDS neuroimaging data
Skm Tea
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54
Repository for the Stanford Knee MRI Multi-Task Evaluation (SKM-TEA) Dataset
Segnetcmr
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54
A Tensorflow implementation of SegNet for cardiac MRI segmentation
Brats Toolkit
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53
Code to preprocess, segment, and fuse glioma MRI scans based on the BraTS Toolkit manuscript.
Brainprep
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51
Preprocessing pipeline on Brain MR Images through FSL and ANTs, including registration, skull-stripping, bias field correction, enhancement and segmentation.
Pygrappa
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51
Python implementations of GRAPPA-like algorithms.
Semidensenet
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48
Repository containing the code of one of the networks that we employed in the iSEG Grand MICCAI Challenge 2017, infant brain segmentation.
Dosma
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46
An AI-powered open-source medical image analysis toolbox
Qsm Tools
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45
List of open-source quantitative susceptibility mapping (QSM) MRI software packages and data
Kspace Explorer
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45
⚕️ An educational tool to visualise k-space and aid the understanding of MRI image generation
Tsan Brain Age Estimation
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43
TSAN: Two-Stage-Age-Net, for brain age estimation from T1-weighted MRI data.
Hippunfold
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38
BIDS App for Hippunfold (automated hippocampal unfolding and subfield segmentation)
Freesurfer
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35
BIDS app wrapping recon-all from FreeSurfer
Nesvor
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30
NeSVoR is a package for GPU-accelerated slice-to-volume reconstruction.
Hcppipelines
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30
A BIDS App for minimal preprocessing using the HCP Pipelines
Im2im Uq
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29
Image-to-image regression with uncertainty quantification in PyTorch. Take any dataset and train a model to regress images to images with rigorous, distribution-free uncertainty quantification.
Miracl
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29
Multi-modal Image Registration And Connectivity anaLysis
Tfce_mediation
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27
Fast regression and mediation analysis of vertex or voxel MRI data with TFCE
Hippmapp3r
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27
AICONSlab's hippocampal segmentation algorithm using CNNs
Brats18 Challege
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27
Multimodal Brain Tumor Segmentation Challenge 2018
Dicomifier
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27
A medical image converter
Prequal
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26
An automated pipeline for integrated preprocessing and quality assurance of diffusion weighted MRI images
Synthtorch
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26
deep neural network-based image translation/synthesis
Brain Mri Segmentation
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25
Smart India Hackathon 2019 project given by the Department of Atomic Energy
Tfkbnufft
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25
A robust, easy-to-deploy non-uniform Fast Fourier Transform in TensorFlow.
Sigmanet
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24
Sigmanet: Systematic Evaluation of Iterative Deep Neural Networks for Fast Parallel MR Image Reconstruction,
Pydiq
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24
Simple DICOM browser in Python (currently not maintained)
Ocra
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24
MRI console
Pytorch 3d Medical Images Segmentation Salmon
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23
Segmentation deep learning ALgorithm based on MONai toolbox: single and multi-label segmentation software developed by QIMP team-Vienna.
Tvb Recon
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22
Tools for creating full TVB models from individual anatomical scans
Mrivis
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21
medical image visualization library and development toolkit
Mri Nufft
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21
Doing non-Cartesian MR Imaging has never been so easy.
Brainy
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21
Brainy is a virtual MRI analyzer. Just upload the MRI scan file and get 3 different classes of tumors detected and segmented. In Beta.
Tensorflow Mri
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21
A Library of TensorFlow Operators for Computational MRI
Subpixel Embedding Segmentation
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20
PyTorch Implementation of Small Lesion Segmentation in Brain MRIs with Subpixel Embedding (ORAL, MICCAIW 2021)
Sdc Bids Smri
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20
Structural Neuroimaging Analysis in Python
Raidionics
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20
Software for automatic segmentation and generation of standardized clinical reports of brain tumors from MRI volumes
Nii2dcm
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20
nii2dcm: NIfTI to DICOM creation with Python
Nn Segmentation For Lar
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20
Neural networks to segment some type of biomedical images
Domainadaptation
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20
Repository for the article "Unsupervised domain adaptation for medical imaging segmentation with self-ensembling".
Mousemorph
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19
Tools for MRI mouse brain morphometry
Sdc Bids Intromri
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19
Introduction to MRI and BIDS
Miqa Phase1
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19
A web application for medical imaging quality assurance
Macapype
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19
PNH segmentation pipelines based on nipype
Vbcg
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18
real-time application for video-based methods in the context of MRI
Hazen
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18
Quality assurance framework for Magnetic Resonance Imaging
Sae
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17
Accepted in MIDL 2020
Dl Direct
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17
DL+DiReCT - Direct Cortical Thickness Estimation using Deep Learning-based Anatomy Segmentation and Cortex Parcellation
Iphigen
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17
A simple command-line interface for image enhancement and color balancing.
Data Multi Subject
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16
Multi-subject data for the Spine Generic project
Brain Tumor Segmentation
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16
Attention-Guided Version of 2D UNet for Automatic Brain Tumor Segmentation
Mt Net
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16
Multi-scale Transformer Network for Cross-Modality MR Image Synthesis (IEEE TMI)
Deepmri
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16
Pytorch implementation of RAKI, k-space interpolation of MRI data
Bvbabel
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16
A lightweight Python library for reading & writing BrainVoyager file formats.
Nigsp
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15
NiGSP: a module for graph signal processing on neuroimaging data
Skbold
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14
Utilities and tools for machine learning on BOLD-fMRI data
Airflow Imaging Plugins
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14
Set of plugins helping to work with imaging data in Airflow.
Cpac
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14
BIDS Application for the Configurable Pipeline for the Analysis of Connectomes (C-PAC)
Csg_mri_pipelines
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13
MRI preprocessing and analysis pipelines and tools for the study of disorders of consciousness
Stress
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12
Implementation of 'Stress: Super-Resolution for Dynamic Fetal MRI using Self-Supervised Learning'
Icvmapp3r
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12
AICONSlab's brain extraction (skull-stripping) algorithm using CNNs
Bids Tools
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11
Tools for dealing with neuroimaging data in the BIDS structure
Hypermapp3r
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11
AICONSlab's white matter hyperintensities (WMH) segmentation algorithm using CNNs
Ukb_segmentation
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10
PyTorch implementation for 2.5D U-Net segmentation of UK Biobank neck-to-knee body MRI
Dynamicradcinemri
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10
Implementation of an iterative network for image reconstruction in 2D radial cardiac cine MRI.
Deepmri
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10
The code for paper 'DeepcomplexMRI: Exploiting deep residual network for fast parallel MR imaging with complex convolution'
Nichart
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10
The neuro-imaging brain aging chart [niCHART] is a comprehensive solution to analyze standard structural and functional brain MRI data across studies. [niCHART] and the associated pre-processing tools implement computational morphometry, functional signal analysis, quality control, statistical harmonization, data standardization, interactive visual
Populse_mia
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10
Multiparametric Image Analysis
Pflsynth
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10
One Model to Unite Them All: Personalized Federated Learning of Multi-Contrast MRI Synthesis (pFLSynth)
Erwin
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10
Quantitative MRI toolbox in Python
Moddropplusplus
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9
Official PyTorch Implementation of ModDrop++ [MICCAI 2022 (early accept)]. A simple yet effective approach to tackle missing-modality problem for multi-modality medical imaging data.
Mrqa
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9
mrQA: tools for quality assurance in medical imaging datasets, including protocol compliance
Fetal Mri Segmentation
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9
Total Body and Brain 3D Segmentation in Fetal MRI scans
Swinganmr
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9
Official implementation of SwinGANMR
Haca3
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8
This is the official site of HACA3 harmonization algorithm.
Brain Tumor Mri Dataset
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8
Utilities to download and load an MRI brain tumor dataset with Python, providing 2D slices, tumor masks and tumor classes.
Truenet
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8
DL tool for white matter hyperintensities segmentation
Brainload
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8
A python module designed to reduce your brain load while accessing FreeSurfer brain surface and morphometry data files of single subjects and groups.
React Fmri
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8
REACT: Receptor-Enriched Analysis of functional Connectivity by Targets
Z Brains
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8
z-brains: open software for epilepsy lesion lateralization and localization
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