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Search results for mri
mri
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229 search results found
Fastmri
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1,197
A large-scale dataset of both raw MRI measurements and clinical MRI images.
Dataset
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856
医学影像数据集列表 『An Index for Medical Imaging Datasets』
Ruru
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755
Native Ruby extensions written in Rust
Dcm2niix
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746
dcm2nii DICOM to NIfTI converter: compiled versions available from NITRC
Setup Ruby
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724
An action to download a prebuilt Ruby and add it to the PATH in 5 seconds
Yjit
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570
Optimizing JIT compiler built inside CRuby
Freesurfer
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509
Neuroimaging analysis and visualization suite
Regexp Examples
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483
Generate strings that match a given regular expression
Sigpy
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276
Python package for signal processing, with emphasis on iterative methods
Mriqc
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275
Automated Quality Control and visual reports for Quality Assessment of structural (T1w, T2w) and functional MRI of the brain
Intensity Normalization
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272
normalize the intensities of various MR image modalities
Bart
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269
BART: Toolbox for Computational Magnetic Resonance Imaging
Vt Unet
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210
[MICCAI2022] This is an official PyTorch implementation for A Robust Volumetric Transformer for Accurate 3D Tumor Segmentation
Brainchop
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208
Brainchop: In-browser 3D MRI rendering and segmentation
Spinalcordtoolbox
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184
Comprehensive and open-source library of analysis tools for MRI of the spinal cord.
Cnn 3d Images Tensorflow
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176
3D image classification using CNN (Convolutional Neural Network)
Deepinv
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165
PyTorch library for solving imaging inverse problems using deep learning
Workbench
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163
Connectome Workbench
Deep Mri Reconstruction
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159
Deep Cascade of Convolutional Neural Networks for MR Image Reconstruction: Implementation & Demo
Qmrlab
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138
Quantitative MRI Made Easy with qMRLab: MRI software for data Simulation, analysis and visualization
Livianet
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133
This repository contains the code of LiviaNET, a 3D fully convolutional neural network that was employed in our work: "3D fully convolutional networks for subcortical segmentation in MRI: A large-scale study"
Torchkbnufft
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133
A high-level, easy-to-deploy non-uniform Fast Fourier Transform in PyTorch.
Unsupervised_anomaly_detection_brain_mri
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123
Autoencoders for Unsupervised Anomaly Segmentation in Brain MR Images: A Comparative Study
Fastmri Reproducible Benchmark
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122
Try several methods for MRI reconstruction on the fastmri dataset. Home to the XPDNet, runner-up of the 2020 fastMRI challenge.
Antsr
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120
Advanced Normalization Tools in R
Smriprep
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111
Structural MRI PREProcessing (sMRIPrep) workflows for NIPreps (NeuroImaging PREProcessing tools)
Bidscoin
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110
BIDScoin converts your source-level neuroimaging data to BIDS
Enigma
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101
The ENIGMA Toolbox is an open-source repository for accessing 100+ ENIGMA statistical maps, visualizing cortical and subcortical surface data, and relating neuroimaging findings to micro- and macroscale brain organization. 🤠
Pypulseq
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98
Pulseq in Python
Mirt.jl
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98
MIRT: Michigan Image Reconstruction Toolbox (Julia version)
Cs_moco_lab
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94
Compressed Sensing and Motion Correction LAB: An MR acquisition and reconstruction system
Braingraph
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94
Graph theory analysis of brain MRI data
Hitchhackers_guide_brain
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86
A list of tutorials and other resources useful to learn open science and neuroimaging, EEG and MEG
Pcrlv2
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83
An official implementation of PCRLv2 (pre-training and fine-tuning code are included).
3d Gan Superresolution
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79
3D super-resolution using Generative Adversarial Networks
Komamri.jl
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77
Koma is a Pulseq-compatible framework to efficiently simulate Magnetic Resonance Imaging (MRI) acquisitions. The main focus of this package is to simulate general scenarios that could arise in pulse sequence development.
Mri Education Resources
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74
Resources for learning the principles of magnetic resonance imaging (MRI)
Mrqy
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73
MRQy is a quality assurance and checking tool for quantitative assessment of magnetic resonance imaging (MRI) data.
Medicaldiffusion
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70
Medical Diffusion: This repository contains the code to our paper Medical Diffusion: Denoising Diffusion Probabilistic Models for 3D Medical Image Synthesis
Resvit
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70
Official Implementation of ResViT: Residual Vision Transformers for Multi-modal Medical Image Synthesis
Micapipe
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69
micapipe from the Multimodal imaging and connectome analysis lab (http://mica-mni.github.io) at the Montreal Neurological Institute. Read The Docs documentation below
Segmentator
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68
3D MRI data exploration and segmentation tool.
Cnn_design_for_ad
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67
Code for "Generalizable deep learning model for early Alzheimer’s disease detection from structural MRIs"
Nifti.jl
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64
Julia module for reading/writing NIfTI MRI files
Hermann
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62
A gem providing cross-platform Kafka producer and consumer support
Meddlr
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59
A flexible ML framework built to simplify medical image reconstruction and analysis experimentation.
Niftidataset
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59
pytorch dataset class for reading and transforming NIfTI files
Mri Deep Learning Tools
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58
Resurces for MRI images processing and deep learning in 3D
Bidskit
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57
Utility functions for working with DICOM and BIDS neuroimaging data
Segnetcmr
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54
A Tensorflow implementation of SegNet for cardiac MRI segmentation
Skm Tea
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54
Repository for the Stanford Knee MRI Multi-Task Evaluation (SKM-TEA) Dataset
Brats Toolkit
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53
Code to preprocess, segment, and fuse glioma MRI scans based on the BraTS Toolkit manuscript.
Pygrappa
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51
Python implementations of GRAPPA-like algorithms.
Brainprep
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51
Preprocessing pipeline on Brain MR Images through FSL and ANTs, including registration, skull-stripping, bias field correction, enhancement and segmentation.
Fsbrain
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50
R library for structural neuroimaging. Provides high-level functions to access (read and write) and visualize surface-based brain morphometry data for individuals and groups.
Semidensenet
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48
Repository containing the code of one of the networks that we employed in the iSEG Grand MICCAI Challenge 2017, infant brain segmentation.
Bids Matlab
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47
MATLAB / Octave tools for BIDS datasets
Label4mri
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47
Label the brain MNI coordinate by AAL/BA system
Prostatex_masks
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46
Lesion and prostate masks for the PROSTATEx training dataset, after a lesion-by-lesion quality check.
Dosma
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46
An AI-powered open-source medical image analysis toolbox
Qsm Tools
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45
List of open-source quantitative susceptibility mapping (QSM) MRI software packages and data
Kspace Explorer
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45
⚕️ An educational tool to visualise k-space and aid the understanding of MRI image generation
Virtual Scanner
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43
An end-to-end hybrid MR simulator/console
Tsan Brain Age Estimation
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43
TSAN: Two-Stage-Age-Net, for brain age estimation from T1-weighted MRI data.
Sepia
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41
Matlab GUI pipeline application for quantitative susceptibility mapping (QSM)
Hippunfold
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38
BIDS App for Hippunfold (automated hippocampal unfolding and subfield segmentation)
Mp3
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38
🔀 Medical software for Processing multi-Parametric images Pipelines
Md Dmri
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36
MATLAB code for Multidimensional Diffusion MRI
Freesurfer
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35
BIDS app wrapping recon-all from FreeSurfer
Ecobidas
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35
Working repository to turn the COBIDAS guidelines to report methods and results in neuroimaging into a user friendly checklist
Mridc
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33
Data Consistency Toolbox for Magnetic Resonance Imaging
Qc
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32
Qoala-T is a supervised-learning tool for quality control of FreeSurfer segmented MRI data
Assemblynet
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31
AssemblyNet: 3D Whole Brain MRI segmentation pipeline
Brain Tumor Segmentation Using Deep Learning
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31
#BRATS2015 #BRATS2018 #deep learning #fully automatic brain tumor segmentation #U-net # tensorflow #Keras
Hyperpolarized Mri Toolbox
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31
The goal of this toolbox is to provide open-source research-level and prototyping software tools for hyperpolarized MRI experiments. It is currently based on MATLAB/Octave code, and includes code for designing radiofrequency (RF) pulses, imaging gradients, data reconstruction, and data analysis. doi: 10.5281/zenodo.1198915
Brainconn
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30
Brainconn - an R package for visualising brain connectivity data in 2D and interactive 3D
Nesvor
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30
NeSVoR is a package for GPU-accelerated slice-to-volume reconstruction.
Hcppipelines
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30
A BIDS App for minimal preprocessing using the HCP Pipelines
Life
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29
Please use the new version of LiFE: www.github.com/brain-life/encode
Im2im Uq
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29
Image-to-image regression with uncertainty quantification in PyTorch. Take any dataset and train a model to regress images to images with rigorous, distribution-free uncertainty quantification.
Miracl
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29
Multi-modal Image Registration And Connectivity anaLysis
Svrtk
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29
MIRTK based SVR reconstruction
Brainsurfer
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28
MATLAB toolbox for visualizing brain data on surfaces.
Dicomifier
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27
A medical image converter
Tfce_mediation
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27
Fast regression and mediation analysis of vertex or voxel MRI data with TFCE
Hippmapp3r
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27
AICONSlab's hippocampal segmentation algorithm using CNNs
Brats18 Challege
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27
Multimodal Brain Tumor Segmentation Challenge 2018
Prequal
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26
An automated pipeline for integrated preprocessing and quality assurance of diffusion weighted MRI images
Synthtorch
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26
deep neural network-based image translation/synthesis
Tfkbnufft
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25
A robust, easy-to-deploy non-uniform Fast Fourier Transform in TensorFlow.
Sycomore
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25
MRI simulation toolkit
Brain Mri Segmentation
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25
Smart India Hackathon 2019 project given by the Department of Atomic Energy
Ocra
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24
MRI console
Ravel
⭐
24
Intensity normalization of structural MRIs using RAVEL
Online_neuroimaging_resources
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24
a laundry list of resources for MRI, fMRI, EEG, MEG...
Pydiq
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24
Simple DICOM browser in Python (currently not maintained)
Sigmanet
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24
Sigmanet: Systematic Evaluation of Iterative Deep Neural Networks for Fast Parallel MR Image Reconstruction,
Jemal
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23
jemal gem – Ruby interface to jemalloc
Pytorch 3d Medical Images Segmentation Salmon
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23
Segmentation deep learning ALgorithm based on MONai toolbox: single and multi-label segmentation software developed by QIMP team-Vienna.
Sunrise
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22
NumPy, SciPy, MRI and Music | Presented at ISMRM 2021 Sunrise Educational Session
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