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Search results for python methylation
methylation
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python
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19 search results found
Remora
⭐
120
Methylation/modified base calling separated from basecalling.
Deepcpg
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108
Deep neural networks for predicting CpG methylation
Wgbs_tools
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100
tools for working with Bisulfite Sequencing data while preserving reads intrinsic dependencies
Deepsignal
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98
Detecting methylation using signal-level features from Nanopore sequencing reads
Princess
⭐
74
Deepsignal Plant
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46
Detecting methylation using signal-level features from Nanopore sequencing reads of plants
Cpgtools
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29
Python package to analyze DNA methylation data
Methphaser
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24
MethPhaser: methylation-based haplotype phasing of human genomes
Methylstar
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16
A fast and robust pre-processing pipeline for bulk or single-cell whole-genome bisulfite sequencing (WGBS) data.
Bsbolt
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16
BiSulfite Bolt - A Bisulfite Sequencing Alignment and Processing Tool
Methylprep
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15
Python-based preprocessing software for Illumina methylation arrays
Scbs
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10
Python package with CLI for downstream analysis of single cell methylation data.
Cemba_data
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8
Mapping pipeline for snmC-seq based technologies.
Pyllelic
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7
pyllelic: a tool for detection of allele-specific methylation variation in bisulfite DNA sequencing.
Deepmod2
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6
DNA 5mC methylation detection from Dorado or Guppy basecalled Oxford Nanopore reads
Pyncbi
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5
A Python API library for exploration and data retrieval from NCBI
Methylize
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5
Python-based Illumina methylation array analysis software
Modulector
⭐
5
An open platform which provides information about miRNAs and genes from different popular databases
Serpent Methylation Pipeline
⭐
5
An efficient, documented, reproducible Snakemake methylation analysis pipeline for BS-seq and EM-seq samples, including cfDNA.
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