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Search results for methylation
methylation
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41 search results found
Nanopolish
⭐
496
Signal-level algorithms for MinION data
Bismark
⭐
335
A tool to map bisulfite converted sequence reads and determine cytosine methylation states
Methylkit
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176
R package for DNA methylation analysis
Methyldackel
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151
A (mostly) universal methylation extractor for BS-seq experiments.
Remora
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120
Methylation/modified base calling separated from basecalling.
Deepcpg
⭐
108
Deep neural networks for predicting CpG methylation
Wgbs_tools
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100
tools for working with Bisulfite Sequencing data while preserving reads intrinsic dependencies
Deepsignal
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98
Detecting methylation using signal-level features from Nanopore sequencing reads
Princess
⭐
74
Modkit
⭐
68
A bioinformatics tool for working with modified bases
Arioc
⭐
54
Arioc: GPU-accelerated DNA short-read alignment
Dmrseq
⭐
47
R package for Inference of differentially methylated regions (DMRs) from bisulfite sequencing
Deepsignal Plant
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46
Detecting methylation using signal-level features from Nanopore sequencing reads of plants
Bioinf Commons
⭐
30
Bioinformatics library in Kotlin
Cpgtools
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29
Python package to analyze DNA methylation data
Methphaser
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24
MethPhaser: methylation-based haplotype phasing of human genomes
Bsbolt
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16
BiSulfite Bolt - A Bisulfite Sequencing Alignment and Processing Tool
Methylstar
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16
A fast and robust pre-processing pipeline for bulk or single-cell whole-genome bisulfite sequencing (WGBS) data.
Methylprep
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15
Python-based preprocessing software for Illumina methylation arrays
Informme
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15
An information-theoretic pipeline for methylation analysis of WGBS data
Defiant
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14
Differential methylation: Easy, Fast, Identification and ANnoTation
Scbs
⭐
10
Python package with CLI for downstream analysis of single cell methylation data.
Bisulfite Seq Tools
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10
Suite of tools to conduct methylation data analysis. Methods from this workspace can be used for alignment and quality control analysis for various protocols including Whole Genom Bisulfite Sequencing (WGBS), Reduced Representation Bisulfite Sequencing (RRBS) and Hybrid Selection Bisulfite Sequencing (HSBS).
Melissa
⭐
10
Bayesian Clustering and Imputation of Single Cell Methylomes
Jbplugin Methylation
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9
JBrowse plugin for methylation related things
Cemba_data
⭐
8
Mapping pipeline for snmC-seq based technologies.
Tabsat
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8
Targeted Amplicon Bisulfite Sequencing Analysis Tool
Epigenomics_cwl
⭐
7
SCREW: A Reproducible Workflow for Single-Cell Epigenomics
Pyllelic
⭐
7
pyllelic: a tool for detection of allele-specific methylation variation in bisulfite DNA sequencing.
Autocirc
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6
A computational toolkit of fast and automatical identification of back-splice junctions of potential circular RNAs (circRNAs) from RNA-seq data.
Deepmod2
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6
DNA 5mC methylation detection from Dorado or Guppy basecalled Oxford Nanopore reads
Cell Free Dna Reading List
⭐
6
Important papers relating to the biology of cell free DNA
Cancer
⭐
6
💹 The package is user friendly interface based on the cgdsr and other modeling packages to explore, compare, and analyse all available Cancer Data (Clinical data, Gene Mutation, Gene Methylation, Gene Expression, Protein Phosphorylation, Copy Number Alteration) hosted by the Computational Biology Center at Memorial-Sloan-Kettering Cancer Center (MSKCC).
Methylgsa
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5
A Bioconductor package and shiny app for DNA methylation data length bias adjustment in gene set testing
Serpent Methylation Pipeline
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5
An efficient, documented, reproducible Snakemake methylation analysis pipeline for BS-seq and EM-seq samples, including cfDNA.
Dna_methylase_finder
⭐
5
Find Prokaryotic DNA methylase genes in proteins, contigs, or genomes
Pyncbi
⭐
5
A Python API library for exploration and data retrieval from NCBI
Methylize
⭐
5
Python-based Illumina methylation array analysis software
Ehr_mrs_ucla
⭐
5
A public repo to share methylation risk scores (MRS) derived from UCLA's electronic health records.
Bioinformatics_pipeline
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5
Bioinformatics Pipeline
Modulector
⭐
5
An open platform which provides information about miRNAs and genes from different popular databases
1-41 of 41 search results
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