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Search results for python epigenetics

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Tombo is a suite of tools primarily for the identification of modified nucleotides from raw nanopore sequencing data.

Megalodon ⭐ 172

Megalodon is a research command line tool to extract high accuracy modified base and sequence variant calls from raw nanopore reads by anchoring the information rich basecalling neural network output to a reference genome/transriptome.

Methylpy ⭐ 116

WGBS/NOMe-seq Data Processing & Differential Methylation Analysis

Deepcpg ⭐ 108

Deep neural networks for predicting CpG methylation

Deepsignal ⭐ 98

Detecting methylation using signal-level features from Nanopore sequencing reads

mgatk: mitochondrial genome analysis toolkit

Cpgtools ⭐ 29

Python package to analyze DNA methylation data

Methylprep ⭐ 15

Python-based preprocessing software for Illumina methylation arrays

Preprocessing pipeline for (sc)ATAC data

Triti Map ⭐ 9

A Snakemake-based pipeline for gene mapping in Triticeae.

A Python API library for exploration and data retrieval from NCBI

Nanopore Methylation ⭐ 5

Long sequencing reads classifier

A SnakeMake workflow to analyse whole genome bisulfite sequencing data from allopolyploids.

Serpent Methylation Pipeline ⭐ 5

An efficient, documented, reproducible Snakemake methylation analysis pipeline for BS-seq and EM-seq samples, including cfDNA.

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