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Search results for epigenetics
epigenetics
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34 search results found
Nanopolish
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496
Signal-level algorithms for MinION data
Snapatac
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227
Analysis Pipeline for Single Cell ATAC-seq
Janggu
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205
Deep learning infrastructure for genomics
Chipseeker
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204
🎯 ChIP peak Annotation, Comparison and Visualization
Tombo
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202
Tombo is a suite of tools primarily for the identification of modified nucleotides from raw nanopore sequencing data.
Maestro
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181
Single-cell Transcriptome and Regulome Analysis Pipeline
Megalodon
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172
Megalodon is a research command line tool to extract high accuracy modified base and sequence variant calls from raw nanopore reads by anchoring the information rich basecalling neural network output to a reference genome/transriptome.
Methylpy
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116
WGBS/NOMe-seq Data Processing & Differential Methylation Analysis
Deepcpg
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108
Deep neural networks for predicting CpG methylation
Deepsignal
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98
Detecting methylation using signal-level features from Nanopore sequencing reads
Mgatk
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89
mgatk: mitochondrial genome analysis toolkit
Dmrseq
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47
R package for Inference of differentially methylated regions (DMRs) from bisulfite sequencing
Haystack_bio
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35
Haystack: Epigenetic Variability and Transcription Factor Motifs Analysis Pipeline
Chromdragonn
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29
Code for the paper "Integrating regulatory DNA sequence and gene expression to predict genome-wide chromatin accessibility across cellular contexts"
Cpgtools
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29
Python package to analyze DNA methylation data
Hichipper
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28
A preprocessing and QC pipeline for HiChIP data
Maestro
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21
Single-cell Transcriptome and Regulome Analysis Pipeline.
Gchromvar
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18
Cell type specific enrichments using finemapped variants and quantitative epigenetic data
Methylprep
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15
Python-based preprocessing software for Illumina methylation arrays
Bprmeth
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14
Modelling DNA methylation profiles
Workflows
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12
CWL based Bioinformatics Workflows
Hicbrowser
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11
Simple web browser to visualize HiC tracks
Proatac
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10
Preprocessing pipeline for (sc)ATAC data
Epicompare
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10
Comparison, benchmarking & QC of epigenetic datasets
Alphabeta
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10
Computational inference of epimutation rates and spectra from high-throughput DNA methylation data in plants
Triti Map
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9
A Snakemake-based pipeline for gene mapping in Triticeae.
Genextender
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8
R/Bioconductor package for optimized functional annotation of ChIP-seq data
Aqua Hichip
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8
Bioinformatic tools (R scripts) for the analysis of Absolute Quantification of Architecture (AQuA-HiChIP) style data.
Biowardrobe
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7
BioWardrobe: an integrated platform for analysis of epigenomics and transcriptomics data
Serpent Methylation Pipeline
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5
An efficient, documented, reproducible Snakemake methylation analysis pipeline for BS-seq and EM-seq samples, including cfDNA.
Nanopore Methylation
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5
Long sequencing reads classifier
Seqcode
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5
Suite of command-line software for high-performance graphical analysis of ChIP-seq/RNA-seq/ATAC-seq data
Pyncbi
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5
A Python API library for exploration and data retrieval from NCBI
Arpeggio
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5
A SnakeMake workflow to analyse whole genome bisulfite sequencing data from allopolyploids.
1-34 of 34 search results
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