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DIPY is the paragon 3D/4D+ imaging library in Python. Contains generic methods for spatial normalization, signal processing, machine learning, statistical analysis and visualization of medical images. Additionally, it contains specialized methods for computational anatomy including diffusion, perfusion and structural imaging.

Qsiprep ⭐ 120

Preprocessing and reconstruction of diffusion MRI

Official repository of DDM2: Self-Supervised Diffusion MRI Denoising with Generative Diffusion Models, ICLR2023

The open source toolbox for reproducible diffusion MRI-based microstructure estimation

Dmriprep ⭐ 61

dMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse dMRI data. The transparent workflow dispenses of manual intervention, thereby ensuring the reproducibility of the results.

Whitematteranalysis ⭐ 56

White matter tractography clustering and more...

Synb0 Disco ⭐ 48

Distortion correction of diffusion weighted MRI without reverse phase-encoding scans or field-maps

The reference implementation for the Non Local Spatial and Angular Matching (NLSAM) denoising algorithm for diffusion MRI

Massively parallel Monte Carlo diffusion MR simulator written in Python.

Sdc Bids Dmri ⭐ 16

Introduction to dMRI

Dw Possum ⭐ 14

Simulate realistic diffusion-weighted MR data

Anomaly detection framework for Tractometry

Pydesigner ⭐ 11

A hands-free DTI, DKI, FBI and FBWM preprocessing pipeline. Information on algorithms and preprocessing steps are available at https://www.biorxiv.org/content/10.1101/2021.10.20 A video tutorial on PyDesigner and its usage is now available at https://www.youtube.com/watch?v=mChQFuQqX3k

This repository contains the code regarding our publication: Improved unsupervised physics-informed deep learning for intravoxel-incoherent motion modeling and evaluation in pancreatic cancer patients

Quantitative MRI toolbox in Python

Mcdc_simulator_public ⭐ 8

The Monte Carlo Diffusion and Collision simulator (MC/DC), is a C++ open-source Diffusion-Weighted Magnetic Resonance Imaging (DW-MRI) Monte Carlo Simulator.

Eddymotion ⭐ 8

Open-source eddy-current and head-motion correction for dMRI.

No Longer Maintained

FOD-Net: A Deep Learning Method for Fiber Orientation Distribution Angular Super Resolution

Automated characterization of noise distributions in diffusion MRI data

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