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Search results for diffusion mri
diffusion-mri
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36 search results found
Dipy
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647
DIPY is the paragon 3D/4D+ imaging library in Python. Contains generic methods for spatial normalization, signal processing, machine learning, statistical analysis and visualization of medical images. Additionally, it contains specialized methods for computational anatomy including diffusion, perfusion and structural imaging.
Qsiprep
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120
Preprocessing and reconstruction of diffusion MRI
Ddm2
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98
Official repository of DDM2: Self-Supervised Diffusion MRI Denoising with Generative Diffusion Models, ICLR2023
Komamri.jl
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77
Koma is a Pulseq-compatible framework to efficiently simulate Magnetic Resonance Imaging (MRI) acquisitions. The main focus of this package is to simulate general scenarios that could arise in pulse sequence development.
Micapipe
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69
micapipe from the Multimodal imaging and connectome analysis lab (http://mica-mni.github.io) at the Montreal Neurological Institute. Read The Docs documentation below
Slicerdmri
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65
Diffusion MRI analysis and visualization in 3D Slicer open source medical imaging platform.
Dmipy
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64
The open source toolbox for reproducible diffusion MRI-based microstructure estimation
Dmriprep
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61
dMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse dMRI data. The transparent workflow dispenses of manual intervention, thereby ensuring the reproducibility of the results.
Mitk Diffusion
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56
MITK Diffusion - Official part of the Medical Imaging Interaction Toolkit
Whitematteranalysis
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56
White matter tractography clustering and more...
Synb0 Disco
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48
Distortion correction of diffusion weighted MRI without reverse phase-encoding scans or field-maps
Life
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29
Please use the new version of LiFE: www.github.com/brain-life/encode
Encode
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28
Method for encoding brain connectomes in multidimensional arrays (tensors).
Mritoolkit
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22
Nlsam
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22
The reference implementation for the Non Local Spatial and Angular Matching (NLSAM) denoising algorithm for diffusion MRI
Org Atlases
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21
ORG Fiber Clustering White Matter Atlas
Disimpy
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21
Massively parallel Monte Carlo diffusion MR simulator written in Python.
Sdc Bids Dmri
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16
Introduction to dMRI
Dw Possum
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14
Simulate realistic diffusion-weighted MR data
Smi
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14
Toolbox for parameter estimation of the Standard Model of diffusion in white matter
Qit
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14
A repository for the Quantitative Imaging Toolkit (QIT)
Detect
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13
Anomaly detection framework for Tractometry
Pydesigner
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11
A hands-free DTI, DKI, FBI and FBWM preprocessing pipeline. Information on algorithms and preprocessing steps are available at https://www.biorxiv.org/content/10.1101/2021.10.20 A video tutorial on PyDesigner and its usage is now available at https://www.youtube.com/watch?v=mChQFuQqX3k
Dtiprep
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11
DTIPrep performs a "Study-specific Protocol" based automatic pipeline for DWI/DTI quality control and preparation
Ivimnet
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11
This repository contains the code regarding our publication: Improved unsupervised physics-informed deep learning for intravoxel-incoherent motion modeling and evaluation in pancreatic cancer patients
Erwin
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10
Quantitative MRI toolbox in Python
Now
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9
NOW - Numerical Optimization of gradient Waveforms
Mcdc_simulator_public
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8
The Monte Carlo Diffusion and Collision simulator (MC/DC), is a C++ open-source Diffusion-Weighted Magnetic Resonance Imaging (DW-MRI) Monte Carlo Simulator.
Eddymotion
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8
Open-source eddy-current and head-motion correction for dMRI.
Dmritool
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8
DMRITool is an open souce toolbox for reconstruction, processing and visualization of diffusion MRI data (DWI, tensor, ODF,EAP, fibers etc.).
Toad
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7
No Longer Maintained
Dmri Explorer
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6
A real-time diffusion MRI viewer for Linux and Windows using OpenGL 4.6.
Autodmri
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6
Automated characterization of noise distributions in diffusion MRI data
Fod Net
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6
FOD-Net: A Deep Learning Method for Fiber Orientation Distribution Angular Super Resolution
Trk Io
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6
TrackVis (*.trk) reader and writer
Ndmg
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5
BIDS app for NeuroData's MRI to Graphs pipeline
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Bids Diffusion Mri (6)
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