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Search results for python differential expression

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11 search results found

Pydeseq2 ⭐ 470

A Python implementation of the DESeq2 pipeline for bulk RNA-seq DEA.

Diffxpy ⭐ 157

Differential expression analysis for single-cell RNA-seq data.

Toolkit for highly memory efficient analysis of single-cell RNA-Seq, scATAC-Seq and CITE-Seq data. Analyze atlas scale datasets with millions of cells on laptop.

Diffexpr ⭐ 67

Porting DESeq2 into python via rpy2

Rna Seq Kallisto Sleuth ⭐ 63

A Snakemake workflow for differential expression analysis of RNA-seq data with Kallisto and Sleuth.

Heatmap Scatter Dash ⭐ 25

Interactive visualizations for differential expression

Batchglm ⭐ 22

Fit generalized linear models in python.

A robust model for quantitative comparison of ChIP-Seq data sets.

Discrete Distributional Differential Expression

Curare - A customizable and reproducible analysis pipeline for RNA-Seq experiments

Utr_add_extend_gtf ⭐ 5

Provided tool will add explicit 3'UTR and extends it into a valid Ensembl GTF file. It's useful for 3'RNAseq when 3' coordinates might not be as good as you expect.

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