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Search results for python bioinformatics analysis

bioinformatics-analysis x

18 search results found

Rnalysis ⭐ 114

RNA sequencing analysis software

Iskylims ⭐ 61

is an open-source LIMS (laboratory Information Management System) for Next Generation Sequencing sample management, statistics and reports, and bioinformatics analysis service management.

Reproducible bioinformatics pipelines in python. Import any Unix tool/command in python.

Sequencework ⭐ 22

programs and scripts, mainly python, for analyses related to nucleic or protein sequences

Reactomepy ⭐ 19

Explore biomolecular pathways in Reactome from the command-line or a Python script

Pbxplore ⭐ 17

A suite of tools to explore protein structures with Protein Blocks 🐍

Snakemake Wrappers ⭐ 14

🐍 Snakemake wrappers for bioinformatics.

A python project for analysis of codon usage for gene or genome analysis

Manuscript describing ChronQC is now available online in Bioinformatics

pMoSS (p-value Model using the Sample Size) is a Python code to model the p-value as an n-dependent function using Monte Carlo cross-validation. Exploits the dependence on the sample size to characterize the differences among groups of large datasets

Protein Feature Extraction ⭐ 10

Python code to extract features from Protein sequences for Machine Learning/Deep Learning

Webservice Cwl ⭐ 10

Programmatic access to various data resources and analysis EBI tools via CWL

A collection of Python modules equivalent to R ReQTL Toolkit aims to identify the association between expressed SNVs with their gene expression using RNA-sequencing data.

Python Library for data analysis based on GMQL

Searching for Horizontal Gene Transfer

Blast Binder ⭐ 6

Repo for running command line-based BLAST in Jupyter environment provided via Binder.

Consensx.itk.ppke.hu ⭐ 5

CoNSEnsX - Complience of NMR-derived Structural Ensembles with Experimental Data

Quality control plotting for long reads

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