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Metaphlan ⭐ 242

MetaPhlAn is a computational tool for profiling the composition of microbial communities from metagenomic shotgun sequencing data

HUMAnN is the next generation of HUMAnN 1.0 (HMP Unified Metabolic Analysis Network).

Maaslin2 ⭐ 86

MaAsLin2: Microbiome Multivariate Association with Linear Models

Kneaddata ⭐ 78

Quality control tool on metagenomic and metatranscriptomic sequencing data, especially data from microbiome experiments.

Melonnpan ⭐ 24

Model-based Genomically Informed High-dimensional Predictor of Microbial Community Metabolic Profiles

Shortbred ⭐ 19

ShortBRED is a pipeline to take a set of protein sequences, reduce them to a set of unique identifying strings ("markers"), and then search for these markers in metagenomic data and determine the presence and abundance of the protein families of interest.

Metawibele ⭐ 15

MetaWIBELE: Workflow to Identify novel Bioactive Elements in microbiome

Sparsedossa2 ⭐ 8

AnADAMA2 is the next generation of AnADAMA (Another Automated Data Analysis Management Application). AnADAMA is a tool to capture your workflow and execute it efficiently on your local machine or in a grid compute environment (ie. sun grid engine or slurm).

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