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Search results for python biobakery

10 search results found

Metaphlan ⭐ 242

MetaPhlAn is a computational tool for profiling the composition of microbial communities from metagenomic shotgun sequencing data

HUMAnN is the next generation of HUMAnN 1.0 (HMP Unified Metabolic Analysis Network).

Phylophlan ⭐ 97

Precise phylogenetic analysis of microbial isolates and genomes from metagenomes

Biobakery_workflows ⭐ 90

bioBakery workflows is a collection of workflows and tasks for executing common microbial community analyses using standardized, validated tools and parameters.

Graphlan ⭐ 78

High-quality circular representations of taxonomic and phylogenetic trees

Kneaddata ⭐ 78

Quality control tool on metagenomic and metatranscriptomic sequencing data, especially data from microbiome experiments.

Shortbred ⭐ 19

ShortBRED is a pipeline to take a set of protein sequences, reduce them to a set of unique identifying strings ("markers"), and then search for these markers in metagenomic data and determine the presence and abundance of the protein families of interest.

Metawibele ⭐ 15

MetaWIBELE: Workflow to Identify novel Bioactive Elements in microbiome

Homebrew Biobakery ⭐ 8

Biobakery formulae for the Homebrew package manager

AnADAMA2 is the next generation of AnADAMA (Another Automated Data Analysis Management Application). AnADAMA is a tool to capture your workflow and execute it efficiently on your local machine or in a grid compute environment (ie. sun grid engine or slurm).

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