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Search results for protein computational biology

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22 search results found

Awesome Deepbio ⭐ 1,467

A curated list of awesome deep learning applications in the field of computational biology

Graphein ⭐ 932

Protein Graph Library

Biotite ⭐ 515

A comprehensive library for computational molecular biology

Jupyter_dock ⭐ 215

Jupyter Dock is a set of Jupyter Notebooks for performing molecular docking protocols interactively, as well as visualizing, converting file formats and analyzing the results.

Compbiodatasetsformachinelearning ⭐ 120

A Curated List of Computational Biology Datasets Suitable for Machine Learning

Fitness landscape exploration sandbox for biological sequence design.

🧬 An R package for visualizing molecular data in 3D

A Python-based Effective Feature Generation Tool from DNA, RNA, and Protein Sequences

NeoDTI: Neural integration of neighbor information from a heterogeneous network for discovering new drug-target interactions

Cell2cell ⭐ 44

User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins

Protein Transformer ⭐ 25

Predicting protein structure through sequence modeling

Data visualization library for creating interactive graphs and dashboards for bioinformatics etc.

Symmetry ⭐ 22

🎡 Detect, analyze, and visualize protein symmetry

KIF - Key Interactions Finder. A python package to identify the key molecular interactions that regulate any conformational change.

Hypothesis Bio ⭐ 14

Hypothesis extension for computational biology

A bare metal Python library for building and manipulating protein molecular structures

Multi-Atom Structure/Selection Toolkit with Interaction Capabilities

Cdeepbind ⭐ 7

cDeepbind: A context sensitive deep learning model of RNA-protein binding

A MUlti-species Network Kernel algorithm to embed proteins from a target network into a source network, creating cross-species representations for various comparative and predictive tasks

Protein-Protein Docking using Genetic Algorithm

Codes and data for the paper entitled "Learning representations to predict intermolecular interactions on large-scale heterogeneous molecular association network"

Protein Recognition Index ⭐ 6

Protein Recognition Index (PRI), measuring the similarity between H-bonding features in a given complex (predicted or designed) and the characteristic H-bond trends from crystallographic complexes

Calculates hydrogen-bond interaction tables for protein-small molecule complexes, based on protein PDB and protonated ligand MOL2 structure input. Raschka et al. (2018) J. Computer-Aided Molec. Design

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