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10 search results found
Zumis
⭐
232
zUMIs: A fast and flexible pipeline to process RNA sequencing data with UMIs
Mpraflow
⭐
27
A portable, flexible, parallelized tool for complete processing of massively parallel reporter assay data
Icshape
⭐
14
icSHAPE pipeline
Proseq2.0
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14
Preprocesses and Aligns Run-On Sequencing (PRO/GRO/ChRO-seq) data from Single-Read or Paired-End Illumina Sequencing
Miseq 16s Pipeline
⭐
11
HPC pipeline for overlapping V4 16S rRNA reads generated on Illumina MiSeq
Baseqdrops
⭐
11
A versatile and lightning fast package for processing 10X, inDrop and Drop-seq data.
Larry
⭐
10
Dropseqrunner
⭐
10
Lightweight pipeline for processing droplet-based single-cell RNA-seq data
Arks
⭐
9
🌈Alignment-free scaffolding of genome assemblies with 10x Genomics Chromium reads
Miseq_bin
⭐
8
Standard tools and protocols for MiSeq amplicon sequencing of 16S rRNA genes
Gb Easy
⭐
6
Bioinformatics pipeline to process genotyping-by-sequencing (GBS) data
Superplus
⭐
6
Slr Superscaffolder
⭐
5
A scaffold assemble pipeline for stLFR reads.
Celseq2
⭐
5
Generate the UMI count matrix from CEL-Seq2 sequencing data
Droprna
⭐
5
Processing 10X,Drop-seq and inDrop RNA-Seq dataset.
14_crispr
⭐
5
Code and processed data reported in Shi et al. (2015) Nat. Biotechnol. [in press]
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