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Search results for pathway analysis

pathway-analysis x
40 search results found
Enrichplot ⭐ 197
Visualization of Functional Enrichment Result
Genetonic ⭐ 74
Enjoy your transcriptomic data and analysis responsibly - like sipping a cocktail
Altanalyze ⭐ 72
AltAnalyze is a multi-functional and easy-to-use software package for automated single-cell and bulk gene and splicing analyses. Easy-to-use precompiled graphical user-interface versions available from our website.
Pathway Mapper ⭐ 52
PathwayMapper: An interactive and collaborative graphical curation tool for cancer pathways
Msigdbr ⭐ 52
MSigDB gene sets for multiple organisms in a tidy data format
Newt ⭐ 48
A web application to visualize and edit pathway models
Scpa ⭐ 33
R package for pathway analysis in scRNA-seq data
Rnadeseq ⭐ 31
Differential gene expression analysis and pathway analysis of RNAseq data
Causalpath ⭐ 27
A project for exploring differentially active signaling paths related to proteomics datasets
Ipcc_sr15_scenario_analysis ⭐ 26
Scenario analysis notebooks for the IPCC Special Report on Global Warming of 1.5°C
Ggpathway ⭐ 22
A tutorial for pathway visualization using tidyverse, igraph, and ggraph
Genescf_inactive ⭐ 20
GeneSCF moved to a dedicated GitHub page, https://github.com/genescf/GeneSCF
Reactomepy ⭐ 19
Explore biomolecular pathways in Reactome from the command-line or a Python script
Pathme ⭐ 17
Harmonizing pathway databases using Biological Expression Language (BEL)
Chise.js ⭐ 14
A web application to visualize and edit the pathway models represented by SBGN Process Description Notation
Mitch ⭐ 14
An R package for multi-dimensional pathway enrichment analysis
Biocor ⭐ 14
Package to calculate functional similarity between genes https://biocor.llrs.dev
Pathways ⭐ 12
Disease pathways in the human interactome
Pathway Forte ⭐ 10
A Python package for benchmarking pathway database with functional enrichment and classification methods
Egsea ⭐ 9
This package implements the Ensemble of Gene Set Enrichment Analyses (EGSEA) method for gene set testing.
Pygenprop ⭐ 9
A python library for programmatic usage of EBI InterPro Genome Properties.
Gsea Api ⭐ 8
Pandas API for multiple Gene Set Enrichment Analysis implementations in Python (GSEApy, cudaGSEA, GSEA)
Vega ⭐ 8
VEGA: VAE Enhanced by Gene Annotations
Compath Resources ⭐ 7
This repository contains the different resources derived or generated using ComPath
Omixer Rpm ⭐ 7
A Reference Pathways Mapper for turning metagenomic functional profiles into pathway/module profiles.
Omixer Rpmr ⭐ 7
An R interface to the omixer-rpm for turning metagenomic functional profiles into pathway/module profiles
Py Sspa ⭐ 7
Single sample pathway analysis tools for omics data
Flexgsea R ⭐ 7
Flexible gene set enrichment analysis
Syblars ⭐ 6
SyBLaRS: Systems Biology Layout & Rendering Service
Compath ⭐ 6
A web application for exploring, analyzing, and curating pathway databases
Pathwaymatcher_dev ⭐ 6
PathwayMatcher is a free, open-source software to search for pathways related to a list of proteins in Reactome. This repository is the development repository. For the latest version see: https://github.com/PathwayAnalysisPlatform/Pathway
Pathcore T Analysis ⭐ 6
This repository is in support of the PathCORE-T paper (https://doi.org/10.1101/147645). It contains all the code and necessary data/metadata to repeat all analyses in the paper.
Rnadetector ⭐ 5
RNAdetector: a free user-friendly and stand-alone software for RNA-Seq data analysis
Gseadv ⭐ 5
Package to analyse gene sets
Gea_community_detection ⭐ 5
Overrepresentation analysis for KEGG and PID pathways using community detection
Results ⭐ 5
Results of the evaluation of pathway databases using TCGA datasets
Reactome2py ⭐ 5
python client for reactome content, analysis, and human functional protein interactions (FI) services api calls.
Genocraft ⭐ 5
GenoCraft: A Comprehensive, User-Friendly Web-Based Platform for High-Throughput Omics Data Analysis and Visualization
Rump ⭐ 5
A Reproducible Untargeted Metabolomics Data Processing Pipeline
Microarraypipeline ⭐ 5
MAAPster is a comprehensive tool to perform transcriptome analysis of human or mouse Affymetrix gene expression data
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Bioinformatics Pathway Analysis (20)
R Pathway Analysis (15)
1-40 of 40 search results
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