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Search results for oxford nanopore
oxford-nanopore
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31 search results found
Nextdenovo
⭐
306
Fast and accurate de novo assembler for long reads
Ngmlr
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230
NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on reads that span structural variations
Pepper
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216
PEPPER-Margin-DeepVariant
Cutesv
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204
Long read based human genomic structural variation detection with cuteSV
Nanosim
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196
Nanopore sequence read simulator
Readfish
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152
CLI tool for flexible and fast adaptive sampling on ONT sequencers
Talon
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117
Technology agnostic long read analysis pipeline for transcriptomes
Viralrecon
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101
Assembly and intrahost/low-frequency variant calling for viral samples
Arcs
⭐
86
🌈Scaffold genome sequence assemblies using linked or long read sequencing data
Transcriptclean
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57
Correct mismatches, microindels, and noncanonical splice junctions in long reads that have been mapped to the genome
Helen
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52
H.E.L.E.N. (Homopolymer Encoded Long-read Error-corrector for Nanopore)
Hlaminer
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46
⛏HLA predictions from NGS shotgun data
Colord
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43
A versatile compressor of third generation sequencing reads.
Swan_vis
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43
A Python library to visualize and analyze long-read transcriptomes
Nanor
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38
Nanopore data analysis in R
Lordfast
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31
Sensitive and Fast Alignment Search Tool for Long Read sequencing Data.
Micropipe
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30
A pipeline for high-quality bacterial genome construction using ONT sequencing
Lrsday
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27
LRSDAY: Long-read Sequencing Data Analysis for Yeasts
Isonclust
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23
De novo clustering of long transcript reads into genes
Tiptoft
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20
Predict plasmids from uncorrected long read data
Duet
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16
SNP-Assisted SV Calling and Phasing Using ONT
Varvamp
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15
Design degenerated primers on highly variable alignments for full genome sequencing or qPCR. Specifically developed for viruses.
Strspy
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14
STRspy: a novel alignment and quantification-based state-of-the-art method, short tandem repeat (STR) detection calling tool designed specifically for long-read sequencing reads such as from Oxford nanopore technology (ONT) and PacBio.
Igda
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10
Detect and phase minor SNVs from long-read sequencing data
Deepselectnet
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8
DeepSelecNet is an enhanced deep learning model to perform read classification for selective sequencing.
Read5
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8
Wrapper to read fast5, slow5, blow5 and pod5 files.
Nanoforms
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6
The repository contains the source code of the NanoForms server (Czmil et al. NanoForms: an integrated server for processing, analysis and assembly of raw sequencing data of microbial genomes, from Oxford Nanopore technology. PeerJ, 2022). It is meant to be the source for standalone server installation. https://doi.org/10.7717/peerj.13056
Slow5 Rs
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5
Low level bindings and wrapper for slow5lib, an alternative for ONT Nanopore sequencing FAST5 output
Pistis
⭐
5
Quality control plotting for long reads
Nanopore Methylation
⭐
5
Long sequencing reads classifier
Modr
⭐
5
An awesome Oxford Nanopore Pipeline for direct RNA-sequencing
Related Searches
Python Oxford Nanopore (21)
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Long Reads Oxford Nanopore (12)
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Genomics Oxford Nanopore (8)
Assembly Oxford Nanopore (7)
Pipeline Oxford Nanopore (6)
Genome Assembly Oxford Nanopore (5)
Sequencing Oxford Nanopore (5)
1-31 of 31 search results
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