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12 search results found

Readfish ⭐ 152

CLI tool for flexible and fast adaptive sampling on ONT sequencers

🌈Scaffold genome sequence assemblies using linked or long read sequencing data

A versatile compressor of third generation sequencing reads.

Swan_vis ⭐ 43

A Python library to visualize and analyze long-read transcriptomes

Lordfast ⭐ 31

Sensitive and Fast Alignment Search Tool for Long Read sequencing Data.

Isonclust ⭐ 23

De novo clustering of long transcript reads into genes

Predict plasmids from uncorrected long read data

SNP-Assisted SV Calling and Phasing Using ONT

Nanoforms ⭐ 6

The repository contains the source code of the NanoForms server (Czmil et al. NanoForms: an integrated server for processing, analysis and assembly of raw sequencing data of microbial genomes, from Oxford Nanopore technology. PeerJ, 2022). It is meant to be the source for standalone server installation. https://doi.org/10.7717/peerj.13056

An awesome Oxford Nanopore Pipeline for direct RNA-sequencing

Quality control plotting for long reads

Low level bindings and wrapper for slow5lib, an alternative for ONT Nanopore sequencing FAST5 output

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