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Search results for ngs rna seq

29 search results found

Deeptools ⭐ 644

Tools to process and analyze deep sequencing data.

Snakepipes ⭐ 359

Customizable workflows based on snakemake and python for the analysis of NGS data

Training Material ⭐ 284

A collection of Galaxy-related training material

Sequana ⭐ 136

Sequana: a set of Snakemake NGS pipelines

Seq2science ⭐ 132

Automated and customizable preprocessing of Next-Generation Sequencing data, including full (sc)ATAC-seq, ChIP-seq, and (sc)RNA-seq workflows. Works equally easy with public as local data.

Isoquant ⭐ 98

Transcript discovery and quantification with long RNA reads (Nanopores and PacBio)

Publication quality NGS track plotting

Callings Nf ⭐ 76

GATK RNA-Seq Variant Calling in Nextflow

Tpmcalculator ⭐ 74

TPMCalculator quantifies mRNA abundance directly from the alignments by parsing BAM files

Pipeliner ⭐ 44

An open-source and scalable solution to NGS analysis powered by the NIH's Biowulf cluster.

Grape Nf ⭐ 35

An automated RNA-seq pipeline using Nextflow

circRNA quantification, differential expression analysis and miRNA target prediction of RNA-Seq data

Ngs_pipeline ⭐ 31

Exome/Capture/RNASeq Pipeline Implementation using snakemake

A python package and a set of shell commands to handle GTF files

Workshop Rnaseq ⭐ 30

Workshop • Analysis of RNA-seq data

Rna Seq Tutorial For Gene Differential Expression Analysis ⭐ 24

This tutorial is created for educational purpose

Project Manager for NGS data analysis

Rnaseq Nf ⭐ 20

RNAseq analysis pipeline

Rnaseq Pipeline ⭐ 18

RNA-seq pipeline for raw sequence alignment and transcript/gene quantification.

Open_pipelines ⭐ 17

Pipelines for NGS data preprocessing by the Bock lab and friends

Ngs_data_analysis_course ⭐ 14

A toolkit for NGS analysis with Python

RNA-seq, QC and differential analysis pipeline

Supports de cours de l'Ecole de Bioinformatique Aviesan - IFB - Inserm "Initiation au traitement des données de génomique obtenues par séquençage à haut débit"

Workshop Ngsintro ⭐ 12

Workshop • Intro to Bioinformatics using NGS data • 5 days

Bioinformatics ⭐ 10

A suite of bioinformatics data processing and analysis pipelines, software, and training resources for common DNA and RNA sequence analysis methods.

Star Seqr ⭐ 9

RNA Fusion Detection and Quantification

Assembly of Phylogenomic Datasets from High-Throughput Sequencing data

Bam Lorenz Coverage ⭐ 6

Generate Lorenz plots and Coverage plots directly from BAM files

Rediscover ⭐ 5

RNA editing discovery from NGS data.

Integrative Pipeline for Splicing Analyses (IPSA) in Nextflow

Genocraft ⭐ 5

GenoCraft: A Comprehensive, User-Friendly Web-Based Platform for High-Throughput Omics Data Analysis and Visualization

Decontaminer ⭐ 5

DecontaMiner is a tool designed and developed to investigate the presence of contaminating sequences in unmapped NGS data. It can suggest the presence of contaminating organisms in sequenced samples, that might derive either from laboratory contamination or from their biological source, and in both cases can be considered as worthy of further investigation and experimental validation. The novelty of DecontaMiner is mainly represented by its easy integration with the standard procedures of NGS da

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