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Search results for rna seq nextflow
nextflow
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rna-seq
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21 search results found
Rnaseq
⭐
718
RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
Rnafusion
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120
RNA-seq analysis pipeline for detection gene-fusions
Scrnaseq
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119
A single-cell RNAseq pipeline for 10X genomics data
Dolphinnext
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92
A graphical user interface for distributed data processing of high throughput genomics
Callings Nf
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76
GATK RNA-Seq Variant Calling in Nextflow
Rnaseq Nf
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59
A proof of concept of RNAseq pipeline
Ngi Rnaseq
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49
Nextflow RNA-Seq Best Practice analysis pipeline, used at the SciLifeLab National Genomics Infrastructure.
Grape Nf
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35
An automated RNA-seq pipeline using Nextflow
Spatialtranscriptomics
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34
Pipeline for processing spatially-resolved gene counts with spatial coordinates and image data. Designed for 10x Genomics Visium transcriptomics.
Differentialabundance
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34
Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq
Circrna
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32
circRNA quantification, differential expression analysis and miRNA target prediction of RNA-Seq data
Rnadeseq
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31
Differential gene expression analysis and pathway analysis of RNAseq data
Pipeliner
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25
A flexible Nextflow-based framework for the definition of sequencing data processing pipelines
Rnatoy
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24
A proof of concept RNA-Seq pipeline with Nextflow
Rnavar
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23
gatk4 RNA variant calling pipeline
Rnaseq Nf
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20
RNAseq analysis pipeline
Mop2
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20
Master of Pores 2
Rnasplice
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18
rnasplice is a bioinformatics pipeline for RNA-seq alternative splicing analysis
Transpi
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13
TransPi – a comprehensive TRanscriptome ANalysiS PIpeline for de novo transcriptome assembly
Bioinformatics
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10
A suite of bioinformatics data processing and analysis pipelines, software, and training resources for common DNA and RNA sequence analysis methods.
Modulome Workflow
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10
Workflow to download, process, and explore microbial RNA-seq data from NCBI SRA
Tostadas
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10
🧬 💻 TOSTADAS → Toolkit for Open Sequence Triage, Annotation and DAtabase Submission
Dualrnaseq
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7
Analysis of Dual RNA-seq data - an experimental method for interrogating host-pathogen interactions through simultaneous RNA-seq.
Speaqeasy
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6
SPEAQeasy: portable LIBD RNA-seq pipeline using Nextflow. Check http://research.libd.org/SPEAQeasy-example/ for an example on how to use this pipeline and analyze the resulting output files.
Ipsa Nf
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5
Integrative Pipeline for Splicing Analyses (IPSA) in Nextflow
Ribomethseq Nf
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5
Nextflow pipeline dedicated to RiboMethSeq data processing
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1-21 of 21 search results
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