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25 search results found

Dash Cytoscape ⭐ 555

Interactive network visualization in Python and Dash, powered by Cytoscape.js

Canvasxpress ⭐ 282

CanvasXpress: A JavaScript Library for Data Analytics with Full Audit Trail Capabilities.

🌶️ An ecosystem in Python for working with the Biological Expression Language (BEL)

Prediction of key transcription factors in cell fate determination using enhancer networks. See full ANANSE documentation for detailed installation instructions and usage examples.

Nxontology ⭐ 59

NetworkX-based Python library for representing ontologies

Flashweave.jl ⭐ 52

Inference of microbial interaction networks from large-scale heterogeneous abundance data

Graph Network Explainability ⭐ 51

Explainability techniques for Graph Networks, applied to a synthetic dataset and an organic chemistry task. Code for the workshop paper "Explainability Techniques for Graph Convolutional Networks" (ICML19)

Metage2metabo ⭐ 42

From annotated genomes to metabolic screening in large scale microbiotas

Synthetic ⭐ 37

Symbolic Generators for Complex Networks

Python implementation of Spatial Analysis of Functional Enrichment (SAFE)

CoNekT (short for Co-expression Network Toolkit) is a platform to browse co-expression data and enable cross-species comparisons.

A Python package for gene network analysis

Drug2ways ⭐ 18

A Python package for drug discovery by analyzing causal paths on multiscale networks

Correlationplus ⭐ 18

A Python package to calculate, visualize and analyze correlation maps of proteins.

Netsmooth ⭐ 18

netSmooth: A Network smoothing based method for Single Cell RNA-seq imputation

Orbitalfeatures ⭐ 13

A sparsity aware implementation of "Biological Network Comparison Using Graphlet Degree Distribution" (Bioinformatics 2007)

Proteinsolver ⭐ 12

Graph neural network capable of generating novel amino acid sequences that fold into proteins with predetermined topologies.

PHOsphoproteomic dissecTiOn using Networks

Randomwalkrestartmh ⭐ 10

A package to perform Random Walk with Restart on different types of networks

phylogenetic networks using ggplot2 and ggtree

Ggnetworx ⭐ 7

phylogenetic networks using ggplot2 and ggtree

RefDNN: a reference drug based neural network for more accurate prediction of anticancer drug resistance (Scientific Reports)

Convolutional Embedded Networks ⭐ 7

Convolutional Embedded Networks for Population Scale Clustering and Bio-ancestry Inferencing

Network Perturbation Amplitude

Snn Seizure Prediction ⭐ 6

Predict seizures from EEGs using two models of spiking neural networks

Schmidt_et_al_2016_community_similarity ⭐ 5

Analysis code for a manuscript on community similarity computation

Distributed simulations and analysis of synchronous Boolean networks

Protein_structure_prediction ⭐ 5

Using recurrent and convolutional neural networks to predict protein secondary structures

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