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Search results for nanopore long reads

14 search results found

[MOVED] Moved to paoloshasta/shasta. De novo assembly from Oxford Nanopore reads

PEPPER-Margin-DeepVariant

Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling

Reference-guided transcript discovery and quantification for long read RNA-Seq data

Pipeline Structural Variation ⭐ 87

Pipeline for calling structural variations in whole genomes sequencing Oxford Nanopore data

Sg Nex Data ⭐ 80

Nanopore RNA-Seq data from the Singapore Nanopore-Expression Project

Taxprofiler ⭐ 78

Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data

Long-reads Gap-free Chromosome-scale Assembler

ClairS - a deep-learning method for long-read somatic small variant calling

A fast tool for hybrid genome assembly of long and short reads

Graph-based assembly phasing

Predict plasmids from uncorrected long read data

Clairs To ⭐ 18

ClairS-TO - a deep-learning method for tumor-only somatic SNV calling

Clair3 Trio ⭐ 12

Clair3-Trio: variant calling in trio using Nanopore long-reads

nPoRe: n-Polymer Realigner for improved pileup-based variant calling

Longread_plots ⭐ 10

A collection of plots for long read sequencing FastQ files from devices like Oxford Nanopore's MinION and PromethION.

Trackcluster ⭐ 9

An analysis pipeline for Nanopore direct-RNA sequencing

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