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Search results for bioinformatics nanopore
bioinformatics
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nanopore
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41 search results found
Sniffles
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479
Structural variation caller using third generation sequencing
Awesome Nanopore
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175
A curated list of awesome nanopore analysis tools.
Mag
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164
Assembly and binning of metagenomes
Genomics
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154
A collection of scripts and notes related to genomics and bioinformatics
Squigglekit
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106
SquiggleKit: A toolkit for manipulating nanopore signal data
Isoquant
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98
Transcript discovery and quantification with long RNA reads (Nanopores and PacBio)
Taxprofiler
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78
Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data
Nanocompore
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56
RNA modifications detection from Nanopore dRNA-Seq data
Rattle
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51
Reference-free reconstruction and error correction of transcriptomes from Nanopore long-read sequencing
Clairs
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42
ClairS - a deep-learning method for long-read somatic small variant calling
Haslr
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39
A fast tool for hybrid genome assembly of long and short reads
Porecov
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38
SARS-CoV-2 workflow for nanopore sequence data
Sketchy
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35
Genomic neighbor typing of bacterial pathogens using MinHash 🐀
Rkmh
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32
Classify sequencing reads using MinHash.
Tailfindr
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32
An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.
Wochenende
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30
Deprecated see https://github.com/MHH-RCUG/nf_wochenende : A whole Genome/Metagenome Sequencing Alignment Pipeline in Python3
Mmlong2
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26
An all-in-one genome-centric metagenomics workflow using long reads
Awesome Sequencing Tech Papers
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26
A collection of publications on comparison of high-throughput sequencing technologies.
Rawhash
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23
RawHash is the first mechanism that can accurately and efficiently map raw nanopore signals to large reference genomes (e.g., a human reference genome) in real-time without using powerful computational resources (e.g., GPUs). Described by Firtina et al. (published at https://academic.oup.com/bioinformatics/article/39
Tiptoft
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20
Predict plasmids from uncorrected long read data
Clairs To
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18
ClairS-TO - a deep-learning method for tumor-only somatic SNV calling
Taeper
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16
A small python program to simulate a real-time Nanopore sequencing run based on a previous experiment.
Container_recipes
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14
Repository with all my container recipes 👩🍳
Streamformatics
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13
Real-time species-typing visualisation for nanopore data.
Clair3 Trio
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12
Clair3-Trio: variant calling in trio using Nanopore long-reads
Fast5seek
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11
Subset of fast5 files contained in a fastq, BAM, or SAM file.
Tbpore
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9
Mycobacterium tuberculosis genomic analysis from Nanopore sequencing data
Monica
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9
MinION Open Nucleotide Identifier for Continuous Analysis - an open source pathogen identifier for real-time analysis on MinION output
Trackcluster
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9
An analysis pipeline for Nanopore direct-RNA sequencing
Nanosim H
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8
NanoSim-H: a simulator of Oxford Nanopore reads; a fork of NanoSim.
Nanometa_live
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7
A streamlined workflow and GUI for real-time species identification and pathogen characterization via nanopore sequencing data. Engineered for precision, speed, and user-friendliness, with offline functionality post-initialization.
Nanoplexer
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6
Tool for demultiplexing Nanopore barcode sequence data
Donut_falls
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6
Basic workflow for nanopore sequencing data
Ampligone
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6
A tool in order to accurately remove primer sequences from NGS reads in an amplicon experiment
Nanotail
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6
R package for visualization and exploratory analysis of Oxford Nanopore direct RNA seq based polyA predictions
Slow5 Rs
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5
Low level bindings and wrapper for slow5lib, an alternative for ONT Nanopore sequencing FAST5 output
Pistis
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5
Quality control plotting for long reads
Mykrobe_tb_workflow
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5
A workflow for analysis and resistance profiling of Mycobacterium tuberculosis nanopore data with Mykrobe
Ninetails
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5
An R package for finding non-adenosine residues in poly(A) tails of ONT direct RNA sequencing reads
Clusterv
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5
ClusterV: finding HIV quasispecies and drug resistance from ONT sequencing data
Dajin
⭐
5
One-step genotyping software using a long-read sequencer
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1-41 of 41 search results
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