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Search results for python long reads

21 search results found

PEPPER-Margin-DeepVariant

Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling

Pipeline Structural Variation ⭐ 87

Pipeline for calling structural variations in whole genomes sequencing Oxford Nanopore data

Princess ⭐ 74

Long-reads Gap-free Chromosome-scale Assembler

ClairS - a deep-learning method for long-read somatic small variant calling

Graph-based assembly phasing

Tandem repeat expansion detection or genotyping from long-read alignments

Order and orientation of complete bacterial genomes

Minimizer-based assembly scaffolding and mapping using long reads

Predict plasmids from uncorrected long read data

Clairs To ⭐ 18

ClairS-TO - a deep-learning method for tumor-only somatic SNV calling

Centroflye ⭐ 17

An algorithm for centromere assembly using long error-prone reads

Metabcc Lr ⭐ 16

Reference-free Binning of Metagenomics Long Reads using Coverage and Composition

Lr Splitpipe ⭐ 13

Demultiplexing and debarcoding tool designed for LR-Split-seq data.

Edgecase ⭐ 13

A framework for extracting telomeric reads from single-molecule sequencing experiments, describing their sequence variation and motifs, and for haplotype inference.

Clair3 Trio ⭐ 12

Clair3-Trio: variant calling in trio using Nanopore long-reads

Genome assembly scaffolding using information from paired-end/mate-pair libraries, long reads, and synteny to closely related species.

Longread_plots ⭐ 10

A collection of plots for long read sequencing FastQ files from devices like Oxford Nanopore's MinION and PromethION.

nPoRe: n-Polymer Realigner for improved pileup-based variant calling

Derives consensus sequences from a set of long noisy reads by clustering and error correction.

Coronavirus (SARS-Cov-2) sequencing analysis

Trackcluster ⭐ 9

An analysis pipeline for Nanopore direct-RNA sequencing

Svjedi Graph ⭐ 5

SV genotyper for long reads with a variation graph

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