Awesome Open Source

Programming Languages

Search results for matlab spike

52 search results found

Caiman Matlab ⭐ 236

Complete Matlab pipeline for large scale calcium imaging data analysis

Robust Offline Spike Sorter

Suite2p ⭐ 116

Tools for processing 2P recordings

Kilosort ⭐ 105

GPU code for spike sorting

Wave_clus ⭐ 102

A fast and unsupervised algorithm for spike detection and sorting using wavelets and super-paramagnetic clustering

Cellexplorer ⭐ 81

CellExplorer is a graphical user interface, a standardized processing module and data structure for exploring and classifying single cells acquired using extracellular electrodes.

Glmspiketraintutorial ⭐ 80

Simple tutorial on Gaussian and Poisson GLMs for single and multi-neuron spike train data

Ap_histology ⭐ 54

Histology processing

Opticka is an experiment manager built on top of the Psychophysics toolbox (PTB) for MATLAB. It runs experimental tasks using flexible state machine logic and easily does dynamic methods-of-constants type experiments with full behavioural control. It uses a class system to create simple to use visual stimuli using experimenter friendly units. Opticka can use an Eyelink eyetracker, Plexon Omniplex neurophysiology data collection and general TTL control using either a cheap LabJack (ms precision)

cortex lab code for electrophysiology

Neuroglm ⭐ 34

Fitting and analysis of trial-based neural spike responses with Generalized Linear Model (GLM).

Sortingquality ⭐ 29

Functions to assess quality of spike sorting results

Neuropixel Utils ⭐ 27

Utilities for managing Neuropixel datasets and Kilosort results

Neural Spike Train Analysis Toolbox for Matlab

up-to-date code for model-based inference of spike trains from calcium imaging

Glmspiketools ⭐ 18

Fitting and simulation of Poisson generalized linear model for single and multi-neuron spike trains (Pillow et al 2008).

Crabsort ⭐ 17

🦀🦀🦀 Sort spikes from extra-cellular recordings using neural networks. Fully automated.

Smc Oopsi ⭐ 16

code to implement our sequential monte carlo (smc) algorithm to perform optimal optical spike inference (oopsi) for individual neurons

Continuous_time_ca_sampler ⭐ 16

The code takes as an input a time series vector of calcium observationsand produces samples from the posterior distribution of the underlying spike in continuous time.

Tmsanalysistoolbox ⭐ 15

Transcranial Magnetic Stimulation (TMS) Analysis Toolbox: A user friendly open source software for basic and advanced analysis of TMS related outcomes

Ising Model ⭐ 14

Fit an Ising model with neural spike train data using Minimum Probability Flow Learning. Based on code from Jascha Sohl-Dickstein.

Lnpfitting ⭐ 14

Linear-Nonlinear-Poisson (LNP) model fitting via Maximally-Informative-Dimensions (MID) / maximum likelihood

Simpleclust ⭐ 12

Manual spike clustering software for matlab

Constrained Foopsi ⭐ 12

Implementation of the constrained deconvolution spike inference algorithm in Matlab

Binarypursuitspikesorting ⭐ 11

Detect synchronous and overlapped spikes in extracellular recordings using Binary Pursuit (Pillow et al 2013)

👼 Matlab package implementing blind deconvolution method for neural spike recovery

Compressivesensingdictionarylearning ⭐ 10

Compressive Sensing using Sparse Dictionary Learning

Stca Dsnn ⭐ 10

This repo is the implementation of the spatio-temporal credit assignment （STCA） algorithm for training deep spiking neural networks.

Accompanying code for Aljadeff et al., 'Analysis of Neuronal Spike Trains, Deconstructed', Neuron (2016)

Ln Model Of Mec Neurons ⭐ 10

Code implements the LN model used to describe spike trains of MEC neurons based on the animal's position, head direction, speed, and theta phase information. Used in Hardcastle et al., 2017.

Spike Ripple Detector Method ⭐ 9

Zenith of Event-based Time-locked Anomalies

Spiketraincommunitiestoolbox ⭐ 9

MATLAB toolbox for spike-train community detection

Spike sorter for electrophysiology data

Maximally Informative Dimensions

Ecker2014 ⭐ 7

Code for reproducing figures in Ecker et al. 2014, Neuron 82(1), 235-248

Pandora Matlab ⭐ 7

PANDORA is a Matlab Toolbox for analyzing neuronal electrophysiology data and constructing databases. See the Wiki for branch information.

Bayesocampus ⭐ 7

a sandbox for Bayesian neural decoding

Validspike ⭐ 7

Spike-sorting and validation metric codes in MATLAB and C

Mixture of drifting t-distribution model for sorting spikes and measuring unit isolation

latent manifold tuning model / P-GPLVM

Cbpspikesortdemo ⭐ 5

Demo code for spike sorting by continuous basis pursuit

Julia Point Process ⭐ 5

The generation/estimation/validation of spike sequences with point process.

Egocentricboundarycells ⭐ 5

Matlab code for egocentric boundary cell identification in freely behaving animals

Testing Open Source Toolboxes ⭐ 5

These are supplementary files for the publication "Comparing open-source toolboxes for processing and analysis of spike and local field potentials data", https://www.frontiersin.org/articles/10.3389/fninf The aim of this contribution is to test and compare functionality of major open-source toolboxes for spike and local field potentials (LFPs) data analysis and processing.

spike extraction from calcium signals (Deneux et al., 2016)

Steprampmcmc ⭐ 5

Tasselnetv2 ⭐ 5

Granger causality for multielectrode array Plexon neuronal recordings.

Spatialneuronnet ⭐ 5

Codes for the paper: Huang C, Ruff DA, Pyle R, Rosenbaum R, Cohen MR and Doiron B (2019) “Circuit models of low dimensional shared variability in cortical networks”, Neuron 101, 337-348, doi: https://doi.org/10.1016/j.neuron.2018.11.034

Dynamic_corr ⭐ 5

Calciumsim ⭐ 5

Simulation of Calcium Imaging Data

Related Searches

Algorithms Matlab (1,381)

Python Matlab (1,338)

C Plus Plus Matlab (1,058)

Matlab Paper (969)

Matlab Octave (846)

Dataset Matlab (808)

Network Matlab (689)

Matlab Matrix (661)

Matlab Optimization (651)

Matlab Segmentation (552)

1-52 of 52 search results

Privacy | About | Terms | Follow Us On Twitter

Copyright 2018-2024 Awesome Open Source. All rights reserved.