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Search results for machine learning genomics
genomics
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35 search results found
Deepvariant
⭐
2,978
DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
Healthcare_ml
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426
A curated list of ML|NLP resources for healthcare.
Glow
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251
An open-source toolkit for large-scale genomic analysis
Janggu
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205
Deep learning infrastructure for genomics
Deep Rules
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198
Ten Quick Tips for Deep Learning in Biology
Xpore
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122
Identification of differential RNA modifications from nanopore direct RNA sequencing
Dnanalyzer
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122
Revolutionizing DNA analysis and making it accessible to all through innovative AI-powered analysis and interpretive tools
Dkm
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94
Dynamic Kernel Matching (DKM) for Classifying Data with Non-conforming Features
Bwa Meme
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92
BWA-MEME: Faster BWA-MEM2 using learned-index
Gnomix
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57
A fast, scalable, and accurate local ancestry method.
Awesome Structural Bioinformatics
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54
Structural Bioinformatics is awesome. Throw your textbook in the garbage, light the garbage can on fire, and blend the ashes into your cold brew almond milk latte and read this.
Scvae
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52
Deep learning for single-cell transcript counts
Kover
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47
Learn interpretable computational phenotyping models from k-merized genomic data
Neural Admixture
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44
Rapid population clustering with autoencoders
Eugene
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44
Elucidating the Utility of Genomic Elements with Neural Nets
Liblevenshtein Java
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40
Various utilities regarding Levenshtein transducers. (Java)
Deepg
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24
DeepG, or 'Deep Genomics', is a R library which allows to train and apply deep neural networks on genomic datasets
Genoml2
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17
GenoML (genoml2) is an open source Python package. It is an automated machine learning (autoML) platform for genomics data
Mantis Ml Release
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15
mantis-ml: Stochastic semi-supervised learning to prioritise genes from high throughput genomic screens
Mural
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15
MuRaL is a deep learning framework for estimating single-nucleotide mutation rates across the genome.
Awesome List Machine Learning Healthcare
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13
A list of awesome resources on the application of machine learning in healthcare
Clustassess
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13
Tools for assessing clustering robustness
Mimsi
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12
Microsatellite Instability Classification using Multiple Instance Learning
Dna Sequence Machine Learning
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12
Understand DNA structure and how machine learning can be used to work with DNA sequence data.
Microbial_amr_ml
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10
Code repository for machine learning and computational analysis of large-scale microbial genomics data (https://rdcu.be/9rHj)
Hammlet
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10
Fast Bayesian Hidden Markov Model with Wavelet Compression
Biomm
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9
BioMM: Biological-informed Multi-stage Machine learning framework for phenotype prediction using omics data
Nlp Approach For Prediction Of Gene Function With Dna Sequencing
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9
Deepbio
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8
This is a curated list of tutorials, projects, libraries, videos, papers, books and anything related to applications of Deep Learning to biomedicine. Feel free to make a pull request to contribute to this list.
Gcgc
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8
An ML-feature processing library for biological sequences.
Phage Host Prediction
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7
Published in PLOS ONE. We show that using embeddings of receptor-binding proteins presents improvements over handcrafted genomic and protein sequence features for phage-host interaction prediction — with the highest performance obtained using the transformer-based protein language model ProtT5
Clinvar Kaggle
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6
Scripts related to the ClinVar conflicting classifications dataset on Kaggle
Igpsd
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5
Integrating genomics and physiologic data (high-frequency) for sepsis detection
Bytesteady
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5
A fast classification and tagging tool using byte-level n-gram embeddings
Dbfe
⭐
5
DBFE is a Python library with feature extraction methods that facilitate classifier learning from distributions of genomic variants.
Cubat
⭐
5
This project is no longer being updated and has been discontinued.
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1-35 of 35 search results
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