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Search results for long read sequencing

long-read-sequencing x

27 search results found

Deepconsensus ⭐ 180

DeepConsensus uses gap-aware sequence transformers to correct errors in Pacific Biosciences (PacBio) Circular Consensus Sequencing (CCS) data.

Assembly and binning of metagenomes

Viralrecon ⭐ 101

Assembly and intrahost/low-frequency variant calling for viral samples

Long-read splice alignment with high accuracy

ClairS - a deep-learning method for long-read somatic small variant calling

Graph-based assembly phasing

Micropipe ⭐ 30

A pipeline for high-quality bacterial genome construction using ONT sequencing

Scnanogps ⭐ 29

Single cell Nanopore sequencing data for Genotype and Phenotype

Awesome Sequencing Tech Papers ⭐ 26

A collection of publications on comparison of high-throughput sequencing technologies.

Long Read Proteogenomics ⭐ 26

A workflow for enhanced protein isoform detection through integration of long-read RNA-seq and mass spectrometry-based proteomics.

Goldrush ⭐ 26

Linear-time de novo Long Read Assembler

An all-in-one genome-centric metagenomics workflow using long reads

Efficient and accurate pathogenicity prediction for coding and regulatory structural variants in long-read genome sequencing

Scisorseqr ⭐ 24

scisorseqr is an R-package for processing of single-cell long read data and analyzing differential isoform expression across any two conditions

NANOME pipeline (Nanopore long-read sequencing data consensus DNA methylation detection)

Clairs To ⭐ 18

ClairS-TO - a deep-learning method for tumor-only somatic SNV calling

Centroflye ⭐ 17

An algorithm for centromere assembly using long error-prone reads

A long-read analysis toolbox for cancer and population genomics

Fast and space-efficient taxonomic classification of long reads

Edgecase ⭐ 13

A framework for extracting telomeric reads from single-molecule sequencing experiments, describing their sequence variation and motifs, and for haplotype inference.

🍊 💫 Trim, circularise and orient long read bacterial genome assemblies

Summarise and plot data from long-read ONT (direct RNA/cDNA) BAM files

Coronavirus (SARS-Cov-2) sequencing analysis

Reorientexpress ⭐ 5

Transcriptome long-read orientation with Deep Learning

Clair3 Rna ⭐ 5

Clair3-RNA - long-read short variant caller for RNA sequencing data

A reproducible and scalable workflow for Long Amplicon Consensus Analysis (LACA)

Related Searches

Bioinformatics Long Read Sequencing (18)

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Genomics Long Read Sequencing (10)

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Assembly Long Read Sequencing (8)

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Pipeline Long Read Sequencing (4)

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