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15 search results found

Deepconsensus ⭐ 180

DeepConsensus uses gap-aware sequence transformers to correct errors in Pacific Biosciences (PacBio) Circular Consensus Sequencing (CCS) data.

Assembly and binning of metagenomes

Long-read splice alignment with high accuracy

ClairS - a deep-learning method for long-read somatic small variant calling

Goldrush ⭐ 26

Linear-time de novo Long Read Assembler

Awesome Sequencing Tech Papers ⭐ 26

A collection of publications on comparison of high-throughput sequencing technologies.

An all-in-one genome-centric metagenomics workflow using long reads

Efficient and accurate pathogenicity prediction for coding and regulatory structural variants in long-read genome sequencing

NANOME pipeline (Nanopore long-read sequencing data consensus DNA methylation detection)

Clairs To ⭐ 18

ClairS-TO - a deep-learning method for tumor-only somatic SNV calling

A long-read analysis toolbox for cancer and population genomics

Edgecase ⭐ 13

A framework for extracting telomeric reads from single-molecule sequencing experiments, describing their sequence variation and motifs, and for haplotype inference.

Fast and space-efficient taxonomic classification of long reads

🍊 💫 Trim, circularise and orient long read bacterial genome assemblies

Summarise and plot data from long-read ONT (direct RNA/cDNA) BAM files

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