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Search results for python long read sequencing

long-read-sequencing x

15 search results found

Deepconsensus ⭐ 180

DeepConsensus uses gap-aware sequence transformers to correct errors in Pacific Biosciences (PacBio) Circular Consensus Sequencing (CCS) data.

Long-read splice alignment with high accuracy

ClairS - a deep-learning method for long-read somatic small variant calling

Graph-based assembly phasing

Scnanogps ⭐ 29

Single cell Nanopore sequencing data for Genotype and Phenotype

An all-in-one genome-centric metagenomics workflow using long reads

Long Read Proteogenomics ⭐ 26

A workflow for enhanced protein isoform detection through integration of long-read RNA-seq and mass spectrometry-based proteomics.

NANOME pipeline (Nanopore long-read sequencing data consensus DNA methylation detection)

Clairs To ⭐ 18

ClairS-TO - a deep-learning method for tumor-only somatic SNV calling

Centroflye ⭐ 17

An algorithm for centromere assembly using long error-prone reads

Edgecase ⭐ 13

A framework for extracting telomeric reads from single-molecule sequencing experiments, describing their sequence variation and motifs, and for haplotype inference.

Coronavirus (SARS-Cov-2) sequencing analysis

Reorientexpress ⭐ 5

Transcriptome long-read orientation with Deep Learning

Clair3 Rna ⭐ 5

Clair3-RNA - long-read short variant caller for RNA sequencing data

A reproducible and scalable workflow for Long Amplicon Consensus Analysis (LACA)

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