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Search results for genomics snakemake

11 search results found

V-pipe is a pipeline designed for analysing NGS data of short viral genomes

Phylociraptor ⭐ 23

rapid phylogenomic tree calculator - A highly customizable framework for reproducible phylogenomic inference

mapping pipeline for ancient DNA

ILIAD: A suite of automated Snakemake workflows for processing genomic data for downstream applications

Mosaicatcher Pipeline ⭐ 19

Integrated workflow for SV calling from single-cell Strand-seq data

Kgwasflow ⭐ 19

kGWASflow is a Snakemake workflow for performing k-mers-based GWAS.

Pipelines in genomics

Triti Map ⭐ 9

A Snakemake-based pipeline for gene mapping in Triticeae.

Riboraptor ⭐ 9

Tool for ribo-seq analysis

Snakemake_rnaseq ⭐ 8

A Snakemake pipeline to go from fastq mRNA sequencing files to raw and normalised counts (usable for downstream EDA and differential analysis)

AllMine, a flexible pipeline for Allele Mining. Develloped at INRA's GAFL unit :

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