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48 search results found
Deep Review
⭐
1,186
A collaboratively written review paper on deep learning, genomics, and precision medicine
Deep Rules
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198
Ten Quick Tips for Deep Learning in Biology
Archive Datacarpentry
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167
Data Carpentry workshop materials
Qqman
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141
An R package for creating Q-Q and manhattan plots from GWAS results
Computationalgenomicsmanual
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135
Robs manual for the computational genomics and bioinformatics class.
Chewbbaca
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113
BSR-Based Allele Calling Algorithm
Benchmarking Tools
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110
Repository for the GA4GH Benchmarking Team work developing standardized benchmarking methods for germline small variant calls
Dkm
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94
Dynamic Kernel Matching (DKM) for Classifying Data with Non-conforming Features
R Bioinformatics Cookbook
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76
R Bioinformatics Cookbook, published by Packt
Genbioconductor
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58
Materials for Genomics Data Science: Introduction to Bioconductor
Data Repository Service Schemas
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57
A repository for the schemas used for the Data Repository Service.
Radiator
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53
RADseq Data Exploration, Manipulation and Visualization using R
Spatiallibd
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53
Code for the spatialLIBD R/Bioconductor package and shiny app
Appliedgenomics2017
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49
JHU EN.600.649: Computational Genomics: Applied Comparative Genomics
Phigaro
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43
Phigaro is a scalable command-line tool for predicting phages and prophages
Humanpilot
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34
Spatial Transcriptomics human DLPFC pilot study part of the spatialLIBD project
Edx
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31
Course materials for the edX Data Analysis for Genomics
Recognizer
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24
A tool for domain based annotation with databases from the Conserved Domains Database
Genomeanalysismodule
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21
Welcome to the website and github repository for the Genome Analysis Module. This website will guide the learning experience for trainees in the UBC MSc Genetic Counselling Training Program, as they embark on a journey to learn about analyzing genomes.
Variant_catalogue_pipeline
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20
Variant catalogue pipeline
Bs831
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18
Course Materials for Genomics Data Mining
Gwas2bed
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16
Extracting disease-specific genomic coordinates from GWAS catalog
Omicssuite.github.io
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15
OmicsSuite website for releasing new version.
Pigx
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15
Pipelines in genomics
Mutview
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13
MutView is a tool to look the reads cover a mutation in bam file, output file is html format, just like a lightweight IGV(Integrative Genomics Viewer).
Chromeqc
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13
ChromeQC: Summarize sequencing library quality of 10x Genomics Chromium linked reads
Seave
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12
Seave is a web platform that enables genetic variants to be easily filtered and annotated with in silico pathogenicity prediction scores and annotations from popular disease databases. Seave stores genomic variation of all types and sizes, and allows filtering for specific inheritance patterns, quality values, allele frequencies and gene lists. Seave is open source and deployable locally, or on a cloud computing provider, and works readily with gene panel, exome and whole genome data, scaling fr
Magiclamp
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12
A platform for targeted annotation of (meta)genomic and (meta)transcriptomic datasets using HMM sets.
R_bio
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12
바닥부터 시작하는 R + 바이오인포
Genomicscourse
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11
For QMUL's Genome Bioinformatics MSc module BIO721P & SIB's Spring school in bioinfo & population genomics
Ga4gh Duri.github.io
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10
Website for the GA4GH Duo work
Usfomicshub.github.io
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10
USF Omics Hub official github-repository: your landing-spot for finding our USF Genomics community-resources.
Rmghc 2018
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10
Nextflow Workshop at Rocky Mountain Genomics HackCon 2018
Workshop Tidyverse
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9
Workshop: Using R/tidyverse to analyze & visualize gapminder/processed transcriptomics data!
Jarvis
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9
JARVIS: a comprehensive deep learning framework to prioritise non-coding variants in whole genomes
Compgen2018
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9
teaching material for compgen2018 course
Biomm
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9
BioMM: Biological-informed Multi-stage Machine learning framework for phenotype prediction using omics data
Cgmonline
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8
CGM 主站
Fastq.bio Serverless
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7
An interactive web tool for quality control of DNA sequencing data, using Cloudflare workers running WebAssembly
Bio720
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7
Repository For graduate class (Practical introduction to Bioinformatics & Genomics). McMaster University
Tutorial_dl_for_genomics
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6
A short tutorial to using DL and keras for genomics with sequence data.
Brick
⭐
6
BRICK (https://brick.ink) creates BRIG-like interactive visualisations for bacterial genome annotations and comparisons 🦠
Duck_comp_gen
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6
Comparative genomics of obligate brood parasite and closely related species in Anatidae
10xqc
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6
A system for monitoring the quality of 10X single cell data
Single Cell_sib_scilifelab
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6
SIB/Scilifelab autumn school in single cell omics 2019.
Wikigenomesbase
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5
A configurable codebase for launching organism specific WikiGenomes spinoff applications (e.g. ChlamBase.org) This is a web application framework for creating a model organism database leveraging the taxonomic, genetic and functional data that has been loaded to Wikidata.org by the Gene Wiki Project.
Microbetrace
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5
The Visualization Multitool for Molecular Epidemiology and Bioinformatics
Adrsm
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5
Ancient DNA Read Simulator for Metagenomic
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