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genome-analysis x

17 search results found

Python library to parse, format, validate, normalize, and map sequence variants. `pip install hgvs`

Earlgrey ⭐ 90

Earl Grey: A fully automated TE curation and annotation pipeline

Mccortex ⭐ 86

De novo genome assembly and multisample variant calling

H.E.L.E.N. (Homopolymer Encoded Long-read Error-corrector for Nanopore)

Teamteri ⭐ 50

Genomics (computational bioinformatic data analysis) running on GCP, AWS or Azure

Biocommons.seqrepo ⭐ 34

non-redundant, compressed, journalled, file-based storage for biological sequences

Cogclassifier ⭐ 27

A tool for classifying prokaryote protein sequences into COG(Cluster of Orthologous Genes) functional category

Bioutils ⭐ 16

provides common tools and lookup tables used primarily by the hgvs and uta packages

Nanorepeat ⭐ 13

NanoRepeat: fast and accurate analysis of Short Tandem Repeats (STRs) from Oxford Nanopore sequencing data

Genomicscourse ⭐ 11

For QMUL's Genome Bioinformatics MSc module BIO721P & SIB's Spring school in bioinfo & population genomics

[in development] Proof-of-Concept variation translation, validation, and registration service

Genome On Diet ⭐ 11

Genome-on-Diet is a fast and memory-frugal framework for exemplifying sparsified genomics for read mapping, containment search, and metagenomic profiling. It is much faster & more memory-efficient than minimap2 for Illumina, HiFi, and ONT reads. Described by Alser et al. (preliminary version: https://arxiv.org/abs/2211.08157).

Fast Bayesian Hidden Markov Model with Wavelet Compression

Positive Selection ⭐ 10

Scripts and procedures for detecting positively selected genes and codons in primates

Unique sequence search by K-mer exclusion

iPat allows you to perform GWAS and GS with drags and clicks!

Handy reusable bioinformatic scripts

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