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47 search results found

Jbrowse ⭐ 437

Full-featured and stable genome browser built with JavaScript and HTML5.

⚡ ♒ Rapid prokaryotic genome annotation

Rapid & standardized annotation of bacterial genomes, MAGs & plasmids

Extensive de-novo TE Annotator

Funannotate ⭐ 261

Eukaryotic Genome Annotation Pipeline

Personalized Genomics and Proteomics. Main diet: Ensembl, side dishes: SNPs

Biomartr ⭐ 198

Genomic Data Retrieval with R

Ltr_retriever ⭐ 167

LTR_retriever is a highly accurate and sensitive program for identification of LTR retrotransposons; The LTR Assembly Index (LAI) is also included in this package.

TOGA (Tool to infer Orthologs from Genome Alignments): implements a novel paradigm to infer orthologous genes. TOGA integrates gene annotation, inferring orthologs and classifying genes as intact or lost.

Ga4gh Server ⭐ 95

Reference implementation of the APIs defined in ga4gh-schemas. RETIRED 2018-01-24

Earlgrey ⭐ 90

Earl Grey: A fully automated TE curation and annotation pipeline

Genomegtftools ⭐ 52

convert various features into a GFF-like file for use in genome browsers

Read Assembly and Annotation Pipeline Tool

A fully automated gene annotator from RNA-Seq expression data

Pipelines Nextflow ⭐ 41

A set of workflows written in Nextflow for Genome Annotation.

Ltr_finder_parallel ⭐ 39

A parallel wrapper for LTR_FINDER

Genome Annotation Without Nightmares

Tools to annotate genomes using long read transcriptomics data

Efficiently keep track of changes to genomes

Transposome ⭐ 30

A toolkit for annotation of transposable element families from unassembled sequence reads

Gcmodeller ⭐ 27

GCModeller: genomics CAD(Computer Assistant Design) Modeller system in .NET language

LRSDAY: Long-read Sequencing Data Analysis for Yeasts

A tool for discovering transposable elements and describing patterns of genome evolution

Varsome Api Client Python ⭐ 26

Example client programs for Saphetor's VarSome annotation API

Pipeline Pinfish Analysis ⭐ 22

Pipeline for annotating genomes using long read transcriptomics data with pinfish

Wgs2ncbi ⭐ 18

Toolkit for preparing genomes for submission to NCBI

Tredparse ⭐ 17

TREDPARSE: HLI Short Tandem Repeat (STR) caller

Workflow for identifying and classifying homologous gene/protein sequences

Cenote Taker ⭐ 14

DEPRECATED: Use Cenote-Taker 3 instead

Peaks2utr ⭐ 12

A robust Python tool for the annotation of 3’ UTRs

Nextflow pipeline for genome annotation of protein-coding genes

Genomeannotator ⭐ 11

Pipeline for the identification of (coding) gene structures in draft genomes.

Genomicannotations.jl ⭐ 11

Docker Galaxy Genome Annotation ⭐ 10

🐳 Galaxy Docker Image with Tools for Genome Annotation

Digs Tool ⭐ 9

Database-Integrated Genome Screening (DIGS) tool. Explore genomes interactively using BLAST and a relational database.

Genenotebook ⭐ 9

A collaborative notebook for genes and genomes

Viral genome assemble and characterisation

Papillomavirus genome annotation tool

Pathogenie ⭐ 7

Desktop tool for microbial genome annotation and gene detection

Ab10 Assembly ⭐ 7

B73Ab10 genome assembly methods

Donut: automated Circos visualization of multiple fasta files within a docker image

Genome Browser ⭐ 6

Genome browser to visualize and analyze genomic data

emm Automatic Isolate Labeller

Genome annotation data analysis and management implemented in pure Python

BED-to-GFF3 converter that runs in parallel

High-precision TE Annotator

ODG: Omics Database Generator - Integration toolkit for -omics data

1-47 of 47 search results

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