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Search results for genome interaction
genome
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interaction
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8 search results found
Hic_data
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128
A (continuously updated) collection of references to Hi-C data. Predominantly human/mouse Hi-C data, with replicates.
Tadbit
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89
TADbit is a complete Python library to deal with all steps to analyze, model and explore 3C-based data. With TADbit the user can map FASTQ files to obtain raw interaction binned matrices (Hi-C like matrices), normalize and correct interaction matrices, identify and compare the so-called Topologically Associating Domains (TADs), build 3D models from the interaction matrices, and finally, extract structural properties from the models. TADbit is complemented by TADkit for visualizing 3D models
Fithic
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57
Fit-Hi-C is a tool for assigning statistical confidence estimates to chromosomal contact maps produced by genome-wide genome architecture assays such as Hi-C.
Chia Pet_tool_v3
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13
ChIA-PET, HiChIP, PLAC-Seq data analysis, with linker detection, linker filter, or restriction process for HiChIP, mapping, call cluster and visulization
Mminte
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12
R.4cker
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12
Hipiler
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10
Visual exploration of large genome interaction matrices with interactive small multiples.
Sponge
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9
Sparse Partial correlation ON Gene Expression - an R package for fast and robust ceRNA network inference
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