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Search results for genome consensus

16 search results found

Nanopolish ⭐ 496

Signal-level algorithms for MinION data

Trycycler ⭐ 264

A tool for generating consensus long-read assemblies for bacterial genomes

August 2019 Consensus Accuracy Update ⭐ 39

A short analysis of Oxford Nanopore consensus accuracy for bacterial genome assemblies

Genome Data Integration ⭐ 35

Methods to integrate data from multiple genome sequencing datasets and form consensus variant calls

Heterogeneity ⭐ 23

Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes

Automated human exome/genome variants detection from FASTQ files

Pipeline Umi Amplicon ⭐ 21

Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers

Hapo-G is a tool that aims to improve the quality of genome assemblies by polishing the consensus with accurate reads.

Indel-aware consensus from a SAM/BAM alignment

Tracespipe ⭐ 16

Reconstruction and analysis of viral and host genomes at multi-organ level

Sc2 Illumina Pipeline ⭐ 14

Bioinformatics pipeline for SARS-CoV-2 sequencing at CZ Biohub

Ervcaller ⭐ 11

ERVcaller is a tool designed to accurately detect and genotype non-reference unfixed endogenous retroviruses (ERVs) and other transposable elements (TEs) in the human genome using next-generation sequencing (NGS) data. We evaluated the tools using both simulated and real benchmark whole-genome sequencing (WGS) datasets. ERVcaller is capable to accurately detect various TE insertions of any lengths, particularly ERVs. It allows for the use of a TE reference library regardless of sequence complexi

SARS-CoV-2: detecting recombinations in viruses using large data sets with high sequence similarity

Genevieve ⭐ 10

Genevieve client: using GenNotes, report ClinVar for individual genomes & add consensus notes

Chromatin Accessibility Annotation Tool

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