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Search results for genome bioconda

21 search results found

Sniffles ⭐ 479

Structural variation caller using third generation sequencing

Genomepy ⭐ 355

genes and genomes at your fingertips

Metawrap ⭐ 320

MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis

Bactopia ⭐ 281

A flexible pipeline for complete analysis of bacterial genomes

Read coverage calculator for metagenomics

NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on reads that span structural variations

Rapid large-scale prokaryote pan genome analysis

Pyrodigal ⭐ 111

Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!

Fast HLA type inference from whole-genome data

Instrain ⭐ 104

Bioinformatics program inStrain

Ggd Recipes ⭐ 81

conda recipes for genomic data

Fit-Hi-C is a tool for assigning statistical confidence estimates to chromosomal contact maps produced by genome-wide genome architecture assays such as Hi-C.

More scalable dereplication for metagenome assembled genomes

miRge - microRNA alignment software for small RNA-seq data, now at v2.0

Towards fast and accurate SNP genotyping from whole genome sequencing data for bedside diagnostics.

Set of tools for viral metagenomics.

Bioinfosummer ⭐ 12

Tutorial for AMSI BioInfoSummer 2018

Bio598_tutorial ⭐ 8

A hands-on tutorial introducing users to reproducible genome reassembly and variant calling

Disty McMatrixface - compute a distance matrix from a core genome alignment file

FOCUS: An Agile Profiler for Metagenomic Data

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1-21 of 21 search results

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