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Search results for bioconda
bioconda
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133 search results found
Bioconda Recipes
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1,539
Conda recipes for the bioconda channel.
Multiqc
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1,148
Aggregate results from bioinformatics analyses across many samples into a single report.
Orthofinder
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547
Phylogenetic orthology inference for comparative genomics
Sniffles
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479
Structural variation caller using third generation sequencing
Genomepy
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355
genes and genomes at your fingertips
Bioconvert
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344
Bioconvert is a collaborative project to facilitate the interconversion of life science data from one format to another.
Fitter
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336
Fit data to many distributions
Metawrap
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320
MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis
Survivor
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299
Toolset for SV simulation, comparison and filtering
Bactopia
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281
A flexible pipeline for complete analysis of bacterial genomes
Cellrank
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279
CellRank: dynamics from multi-view single-cell data
Coverm
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237
Read coverage calculator for metagenomics
Ngmlr
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230
NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on reads that span structural variations
Roary
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219
Rapid large-scale prokaryote pan genome analysis
Tools
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205
Python package with helper tools for the nf-core community.
Pbbioconda
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195
PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.
Modules
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180
Repository to host tool-specific module files for the Nextflow DSL2 community!
Rust Bio Tools
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154
A set of command line utilities based on Rust-Bio.
Longshot
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142
diploid SNV caller for error-prone reads
Alfred
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129
BAM Statistics, Feature Counting and Annotation
Sars Cov 2
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127
Ongoing analysis of COVID-19 using Galaxy, BioConda and public research infrastructures
Das_tool
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124
DAS Tool
Pyrodigal
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111
Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!
Run_dbcan
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109
Run_dbcan V4, using genomes/metagenomes/proteomes of any assembled organisms (prokaryotes, fungi, plants, animals, viruses) to search for CAZymes.
Hla La
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107
Fast HLA type inference from whole-genome data
Instrain
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104
Bioinformatics program inStrain
Anndata2ri
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104
Convert between AnnData and SingleCellExperiment
Seqfu2
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96
🚀 seqfu - Sequece Fastx Utilities
Bioconda Utils
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95
Utilities for building and managing bioconda recipes
Cellbrowser
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93
Python pipeline and Javascript scatter plot library for single-cell datasets, http://cellbrowser.rtfd.org
Tracy
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92
Basecalling, alignment, assembly and deconvolution of Sanger Chromatogram trace files
Cmappy
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86
Assorted tools for interacting with .gct, .gctx files and other Connectivity Map (Broad Institute) data/tools
Mykrobe
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85
Antibiotic resistance prediction in minutes
Ega Download Client
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83
A Python-based EGA download client
Ggd Recipes
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81
conda recipes for genomic data
Staramr
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75
Scans genome contigs against the ResFinder, PlasmidFinder, and PointFinder databases.
Charger
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70
Characterization of Germline variants
Svanalyzer
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68
Tools for the analysis of structural variation in genomes
Sccaf
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65
Single-Cell Clustering Assessment Framework
Fluff
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59
Fluff is a Python package that contains several scripts to produce pretty, publication-quality figures for next-generation sequencing experiments.
Fithic
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57
Fit-Hi-C is a tool for assigning statistical confidence estimates to chromosomal contact maps produced by genome-wide genome architecture assays such as Hi-C.
Cenote Taker2
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57
Cenote-Taker2: Discover and Annotate Divergent Viral Contigs (Please use Cenote-Taker 3 instead)
Hulk
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57
Histosketching Using Little Kmers
Bamscale
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55
BAMscale is a one-step tool for either 1) quantifying and normalizing the coverage of peaks or 2) generated scaled BigWig files for easy visualization of commonly used DNA-seq capture based methods.
Chanjo
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48
Chanjo provides a better way to analyze coverage data in clinical sequencing.
Deepsvr
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45
Groot
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43
A resistome profiler for Graphing Resistance Out Of meTagenomes
Peptide Shaker
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41
Interpretation of proteomics identification results
Scaden
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40
Deep Learning based cell composition analysis with Scaden.
Biokit
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40
Bioinformatics in Python
Mutmap
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40
MutMap pipeline to identify causative mutations responsible for a phenotype
Nphase
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39
Ploidy agnostic phasing pipeline and algorithm
Migmap
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38
HTS-compatible wrapper for IgBlast V-(D)-J mapping tool
Fpa
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38
Filter of Pairwise Alignement
Wasabi
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36
Prepare Sailfish and Salmon output for downstream analysis
Searchgui
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36
Highly adaptable common interface for proteomics search and de novo engines
Covtobed
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36
⛰ covtobed | Convert the coverage track from a BAM file into a BED file
Haystack_bio
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35
Haystack: Epigenetic Variability and Transcription Factor Motifs Analysis Pipeline
Galah
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35
More scalable dereplication for metagenome assembled genomes
Bioconda.github.io
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32
Bioconda is a distribution of bioinformatics software realized as a channel for the versatile package manager Conda.
Plastid
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32
Position-wise analysis of sequencing and genomics data
Pygtftk
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30
A python package and a set of shell commands to handle GTF files
Ribocode
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28
release version
Cnv_facets
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26
Somatic copy variant caller (CNV) for next generation sequencing
Fwdpy11
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25
Forward-time simulation in Python using fwdpp
Pyrpipe
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25
Reproducible bioinformatics pipelines in python. Import any Unix tool/command in python.
Scasat
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24
Scasat is a single cell ATAC-seq preprocessing and analysis pipeline
Sina
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24
SINA - Reference based multiple sequence alignment
Mirge
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24
miRge - microRNA alignment software for small RNA-seq data, now at v2.0
Cwl Ngs Workflows Cbb
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23
A set of CWL tools and workflows used by NCBI Computational Biology Branch for NGS data analysis
Pureclip
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20
Capturing protein-RNA interaction footprints from single-nucleotide CLIP-seq data
Assemblycomparator2
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20
🦠📇 Compare prokaryotic genomic assemblies
Homebrew Cbl
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20
Homebrew repository for CloudBioLinux: incubator for formulas to end up in homebrew-science
Hypercluster
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20
Scelvis
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19
🎇 SCelVis - web-based visualization of single-cell data. ➡️ ➡️ Demo ➡️➡️
Surpyvor
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17
A python wrapper around SURVIVOR
Dreamtools
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17
Code sharing related to DREAM challenges
Dahak
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16
benchmarking and containerization of tools for analysis of complex non-clinical metagenomes.
Plasmidtron
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16
Assembling the cause of phenotypes and genotypes from NGS data
Win10 Linux Conda How To
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16
A tutorial on how to set up a Linux environment on a computer running Windows 10. Followed by how to install and use (bio)conda.
Svict
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16
Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA
Farm Notes
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16
notes on the farm cluster
Bio Tradis
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15
A set of tools to analyse the output from TraDIS analyses
Vargeno
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15
Towards fast and accurate SNP genotyping from whole genome sequencing data for bedside diagnostics.
Smaca
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15
SMN1 copy-number and sequence variant analysis from next generation sequencing data
Dugong
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15
🐳 Dugong - Scientific Linux Container
Dietnet
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15
Diet networks in TensorFlow
Mlst_check
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14
Multilocus sequence typing by blast using the schemes from PubMLST
Manorm
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14
A robust model for quantitative comparison of ChIP-Seq data sets.
Cocoscore
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14
CoCoScore: context-aware co-occurrence scores for text mining applications
Virmet
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13
Set of tools for viral metagenomics.
Ymp
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13
Flexible omics pipeline
Sensv
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13
A tool to detect structural variant
Seqflow
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13
My pipeline and code collections for NGS data analysis, such as RNA-seq, ChIP-seq, MNase-seq, Hi-C, Trac-looping and etc, mainly keep the analysis within Python.
Rsidx
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12
Library for indexing VCF files for random access searches by rsID
Bioinfosummer
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12
Tutorial for AMSI BioInfoSummer 2018
Ancestry_hmm S
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12
Ancestry_HMM-S is program designed to infer adaptive introgression from population genomic data
Scaffold_builder
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12
Combining de novo and reference-guided assembly with Scaffold_builder
Convert_zero_one_based
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11
Python CLI to convert between zero and one based genomic coordinate systems
R Seurat Scripts
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11
Scripts to install as a Bioconda package for making workflows
Related Searches
Python Bioconda (99)
Conda Bioconda (60)
Bioinformatics Bioconda (57)
1-100 of 133 search results
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