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193 search results found

Cloud-native genomic dataframes and batch computing

Self Parking Car Evolution ⭐ 636

🧬 Training the car to do self-parking using a genetic algorithm

Platypus ⭐ 524

A Free and Open Source Python Library for Multiobjective Optimization

Gggenes ⭐ 428

➡️️➡️️⬅️️➡️️ Draw gene arrow maps in ggplot2

Koi Farm, a koi breeding game

Cellrank ⭐ 279

CellRank: dynamics from multi-view single-cell data

Intermine ⭐ 228

A powerful open source data warehouse system

Statistical genetics toolkit

Gwa_tutorial ⭐ 184

A comprehensive tutorial about GWAS and PRS

Annotsv ⭐ 180

Annotation and Ranking of Structural Variation

Msprime ⭐ 161

Simulate genealogical trees and genomic sequence data using population genetic models

Graphtyper ⭐ 156

Population-scale genotyping using pangenome graphs

Neuroevolution Btc Trader ⭐ 146

Building a population of models that trade crypto and mutate iteratively

Lineage ⭐ 114

tools for genetic genealogy and the analysis of consumer DNA test results

Molgenis ⭐ 106

MOLGENIS - for scientific data: management, exploration, integration and analysis.

Rare variant test software for next generation sequencing data

Impute Me ⭐ 92

This is the code behind the www.impute.me site. It contains algorithms for personal genome analysis, including imputation and polygenic risk score calculation

Osgenome ⭐ 90

An Open Source Web Application for Genetic Data (SNPs) using 23AndMe and Data Crawling Technologies

Assorted tools for interacting with .gct, .gctx files and other Connectivity Map (Broad Institute) data/tools

Cutevariant ⭐ 85

A standalone and free application to explore genetics variations from VCF file

Verifybamid ⭐ 78

VerifyBamID2: A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.

Framework for Interpretable Neural Networks

Humanidiogramlibrary ⭐ 70

Resource of human chromosome schematics & images

JavaScript library for creative coding

Pyro Cov ⭐ 68

Pyro models of SARS-CoV-2 variants

Geneticsmakie.jl ⭐ 66

🧬High-performance genetics- and genomics-related data visualization using Makie.jl

Code to compute the XP-CLR statistic to infer natural selection

Awesome Genetics ⭐ 62

A curated list of awesome bioinformatics software.

Trifusion ⭐ 61

Streamlining phylogenomic data gathering, processing and visualization

Awesome Structural Bioinformatics ⭐ 54

Structural Bioinformatics is awesome. Throw your textbook in the garbage, light the garbage can on fire, and blend the ashes into your cold brew almond milk latte and read this.

Radiator ⭐ 53

RADseq Data Exploration, Manipulation and Visualization using R

Genotify ⭐ 51

A minimal desktop app for easy and convenient gene annotation.

Genelab_data_processing ⭐ 50

A roguelike game where you play a micro organism inside a larger organism!

Varfish Server ⭐ 40

VarFish: comprehensive DNA variant analysis for diagnostics and research

Making Structural Equation Modeling (SEM) in R quick & powerful

Tomahawk ⭐ 39

Fast calculations of linkage-disequilibrium in large-scale human cohorts

Popgen.jl ⭐ 38

Population Genetics in Julia

GORpipe is a tool based on a genomic ordered relational architecture and allows analysis of large sets of genomic and phenotypic tabular data using declarative query language, in a parallel execution engine.

Digital Expression Explorer 2 (DEE2): a repository of uniformly processed RNA-seq data

SARS-Cov-2 Recombinant Finder for fasta sequences

Genx provides modular building blocks to run simulations of optimization and search problems using Genetic Algorithms

Variantkey ⭐ 34

Numerical Encoding for Human Genetic Variants

As a part of COVID-19 Host Genetics Initiative, we perform the following set of analyses to better understand the genetic basis of COVID-19 susceptibility and severity.

Phenopolis ⭐ 32

An Open Platform for Harmonisation & Analysis of Sequencing & Phenotype Data

Fastbaps ⭐ 31

A fast approximation to a Dirichlet Process Mixture model (DPM) for clustering genetic data

Genetic Trait Detector ⭐ 30

This python script detects known traits in raw human genetic data.

Locuszoom Standalone ⭐ 30

Create regional association plots from GWAS or meta-analysis

A Suite of Packages for Analysis of Big Genomic Data

Traveling Salesman Problem Using Parallel Genetic Algorithms

A set of scripts for calculating pairwise SNP distance

Epistasis ⭐ 28

A Python API for estimating statistical high-order epistasis in genotype-phenotype maps.

Swipe your Structural Variants called on long (ONT/PacBio) reads with short exact (Illumina) reads.

Graph Coloring ⭐ 28

Graph grounding for graph coloring algorithms such as Welsh Powell and Evolution algorithms like Harmony Search and Genetic

Orthoevolution ⭐ 28

An easy to use and comprehensive python package which aids in the analysis and visualization of orthologous genes. 🐵

Darjeeling ⭐ 27

Language-independent, search-based program repair -- just your cup of tea! ☕

Genome-wide imputation pipeline

Async Genetic ⭐ 25

A blazing fast and fully async genetic algorithm

Forward-time simulation in Python using fwdpp

Password Ga ⭐ 25

Password Generator using Genetic Algorithm

Parameterize.net ⭐ 24

Parameterize.Net is a library that allows developers to represent complex objects using float array.

Structure_threader ⭐ 24

A wrapper program to parallelize and automate runs of "Structure", "fastStructure" and "MavericK".

Autopvs1 ⭐ 23

An automatic classification tool for PVS1 interpretation of null variants

Gnomad_db ⭐ 23

This package scales the huge gnomAD files to a SQLite database, which is easy and fast to query. It extracts from a gnomAD vcf the minor allele frequency for each variant.

Pgltools ⭐ 23

Paired Genomic Loci Tool Suite

strataG is a toolkit for haploid sequence and multilocus genetic data summaries, and analyses of population structure.

Genelab Training ⭐ 22

A repository for GeneLab Training documentation.

ILIAD: A suite of automated Snakemake workflows for processing genomic data for downstream applications

Genomeanalysismodule ⭐ 21

Welcome to the website and github repository for the Genome Analysis Module. This website will guide the learning experience for trainees in the UBC MSc Genetic Counselling Training Program, as they embark on a journey to learn about analyzing genomes.

Msabrowser ⭐ 21

🧬 MSABrowser: dynamic and fast visualization of sequence alignments, variations, and annotations

Geneticsjs ⭐ 21

Evolutionary algorithms library for the web 🧬

Kegg Crawler ⭐ 18

A parallel API crawler for the retrieval of Kyoto Encyclopedia of Genes and Genomes metabolic and genomics data.

Genalgo.js ⭐ 17

Genetic and evolutionary algorithms in Javascript.

Codonadaptationindex ⭐ 17

Python Implementation of Codon Adaption Index

A minimal genetic data explorer that processes all genetic information locally.

Flexible genetic algorithm implementation in TypeScript.

GenoML (genoml2) is an open source Python package. It is an automated machine learning (autoML) platform for genomics data

Phaenotyp ⭐ 17

Phänotyp allows to perform genetic mutation of architectural structures. Furthermore it can be used to analyze moving shapes. This is especially useful when working on kinematic architectural projects. The tool is focusing on early stages of the design process and can be used for free without any warranty. If you want to participate in the project please get in contact via:

stackr: an R package to run stacks software pipeline

High-level API for storing and querying sequence variant data

Genomic and Proteomic data exploration and pattern mining

Graphsim ⭐ 16

R package: Simulate Expression data from igraph network using mvtnorm (CRAN; JOSS)

Genetics ⭐ 16

Genetics (Initialization, Selection, Crossover, Mutation)

Variant Interpretation Pipeline

Goldenrecord ⭐ 15

one aesthetic way to store musical notes into nucleic acid sequence

Manhattan_generator ⭐ 15

Manhattan plot Generator

Neural Go ⭐ 15

Genetic Neural Networks

Lava Dna ⭐ 15

LAVA (LAMP Assay Versatile Analysis) is an extendable open-source Loop-mediated isothermal AMPlification (LAMP)

Synopsys Project 2017 ⭐ 14

A deep learning based bioinformatics project on epigenetics in Type 2 Diabetes.

Framework for efficient high-dimensional association analyses.

Python module to read binary Plink files.

Gentropy ⭐ 13

Open Targets python framework for post-GWAS analysis

Core library and basic plug-ins for the Amyris Genotype Specification Language (GSL) compiler.

Chatgpt For Genetics ⭐ 13

Chat with Open Targets genetics database leveraging text-to-graphQL capabilities of OpenAI Codex.

🐶 hlabud: HLA genotype analysis in R

gaai - Genetic Algorithm Artificial Intelligence Database Performance Tuning

VEP-like tool for sequence ontology and HGVS annotation of VCF files

1000 Genomes Project Metadata R Package

Wetlabcalc ⭐ 12

Wetlab Calculator

Pygenetic ⭐ 12

A multi-purpose genetic algorithm written in python

1-100 of 193 search results

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