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Search results for genomics fasta

42 search results found

Pyfaidx ⭐ 427

Efficient pythonic random access to fasta subsequences

✂️ ⚡ Rapid haploid variant calling and core genome alignment

Minigraph ⭐ 367

Proof-of-concept seq-to-graph mapper and graph generator

A Java API for high-throughput sequencing data (HTS) formats.

Gfatools ⭐ 181

Tools for manipulating sequence graphs in the GFA and rGFA formats

Genomics ⭐ 154

A collection of scripts and notes related to genomics and bioinformatics

Genozip ⭐ 144

A modern compressor for genomic files (FASTQ, SAM/BAM/CRAM, VCF, FASTA, GFF/GTF/GVF, 23andMe...), up to 5x better than gzip and faster too

Redundans ⭐ 121

Redundans is a pipeline that assists an assembly of heterozygous/polymorphic genomes.

Sibeliaz ⭐ 113

A fast whole-genome aligner based on de Bruijn graphs

🚀 seqfu - Sequece Fastx Utilities

Assembly Stats ⭐ 92

Get assembly statistics from FASTA and FASTQ files

A DNA Sequence Alignment/Map (SAM) library for Clojure

Python package and CLI for whole-genome duplication related analyses

A secure encryption tool for genomic data

Predict AMPs in (meta)genomes and peptides

Python3 scripts to manipulate FASTA and FASTQ files

Assembly_improvement ⭐ 39

Improve the quality of a denovo assembly by scaffolding and gap filling

PERF is an Exhaustive Repeat Finder

Bac Genomics Scripts ⭐ 28

Collection of scripts for bacterial genomics

Recognizer ⭐ 24

A tool for domain based annotation with databases from the Conserved Domains Database

Order and orientation of complete bacterial genomes

UniProt Id Mapping through API

Genetic Map Comparison

Wgs2ncbi ⭐ 18

Toolkit for preparing genomes for submission to NCBI

Mlst_check ⭐ 14

Multilocus sequence typing by blast using the schemes from PubMLST

🔬🐛 Rapid 16s rRNA identification from isolate FASTQ files

vSNP -- validate SNPs

🍊 💫 Trim, circularise and orient long read bacterial genome assemblies

Explore and analyze biological sequence data

Dna Sequence Machine Learning ⭐ 12

Understand DNA structure and how machine learning can be used to work with DNA sequence data.

Sequence Database Curator ⭐ 10

This program dereplicates and/or filter nucleotide and/or protein database from a list of names or sequences (by exact match).

Lightweight C++ library for reading FASTA and FASTQ files.

Multiphate2 ⭐ 8

multiPhATE with comparative genomics

A suite of unique bioinformatics tools for the brave explorer.

Generic_genomics ⭐ 7

small scripts, functions or bits of code for parsing genomic data

Pathogenie ⭐ 7

Desktop tool for microbial genome annotation and gene detection

Emr Hbase Sample ⭐ 7

sample genomics application for use with hbase and emr

Small scripts for population genetics analysis

Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.

Broad Fungalgroup ⭐ 6

Broad Fungal Genomics group scripts

some scripts I use in my genomic data analysis workflow

Handy reusable bioinformatic scripts

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1-42 of 42 search results

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